View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_high_4 (Length: 423)
Name: NF7194_high_4
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 42325081 - 42325322
Alignment:
| Q |
18 |
acatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagt |
117 |
Q |
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| T |
42325081 |
acatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagt |
42325180 |
T |
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| Q |
118 |
tgttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatat |
217 |
Q |
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| T |
42325181 |
tgttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatat |
42325280 |
T |
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| Q |
218 |
gtttagcgaag---attgaactctgaaccctgcatataaata |
256 |
Q |
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| T |
42325281 |
gtttagcgaagaatattgaactctgaaccctgcatataaata |
42325322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 42325363 - 42325486
Alignment:
| Q |
278 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325363 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
42325462 |
T |
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| Q |
378 |
caatctcaactttgggtttggtgt |
401 |
Q |
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| T |
42325463 |
caatctcaactttgggtttggtgt |
42325486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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