View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_low_1 (Length: 737)
Name: NF7194_low_1
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 191 - 721
Target Start/End: Original strand, 30778234 - 30778754
Alignment:
| Q |
191 |
tatattaacaaacggagttctacatccgcacaagaagtgttaggttaagattcagtaagagttacagacaacaagcaaataacctataccacgactaatt |
290 |
Q |
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| T |
30778234 |
tatattaacaaacggagttctacgtccgcacaagaagtgttag----------actaagagttacagacagcaaacaaataacctataccacgactaatt |
30778323 |
T |
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| Q |
291 |
aataaaaaatggaaatcactaactaggaatcatggtaaaatactcaatgagatttgtccaccaatgatgaaaatcaaaagctaagttgcaatttttgctt |
390 |
Q |
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| T |
30778324 |
aataaaaaatggaaatcactaactaggaatcatggtaaaacactcaatgagatttgtccaccgatgatgaaaatcaaaagctacgttgcaatttttgctt |
30778423 |
T |
|
| Q |
391 |
gtccaccgatgatgaaaatcaaaggctaagttgttaattttcgattgtaaccatctaaaagaagaaaacttcacgatgttcaccggttgctgtatcgatt |
490 |
Q |
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| T |
30778424 |
gtccaccgatgatgaaaatcaaaagctaagttgttaattttcggttgtaaccatctaaaagaagaaaatttcacgatattcaccggttgttgtatcgatt |
30778523 |
T |
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| Q |
491 |
gatctatatgtcgaaaaatacgactattcttgtccttccaaa-ctcttaaacaaccgacaactaaatcacatggagacgtcttcttccacggttacccta |
589 |
Q |
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| T |
30778524 |
g-tctatatgtcgaaaaatacgactattcttatccttccaaatatcttaaacaaccgacaactaaatcacatggagacgtcttcttccaccgctatccta |
30778622 |
T |
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| Q |
590 |
gcctatcaatcccccatgctagcctcctaatctccactaaggtaacatctttatcaaacgtaaatcaaaaagacgccaaaacctaacccacaaacttgca |
689 |
Q |
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| T |
30778623 |
gcctatcaatcccccatgctagcctcctaatctccactaaggtaacacctttatcaaacgtaaatcaaaaggacgccaaaacctaacccacaaaccttca |
30778722 |
T |
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| Q |
690 |
ccatgcagtcaaagatcacaccaaaatgatgt |
721 |
Q |
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| T |
30778723 |
ccatgcagtcaaagatcacaccaaaatgatgt |
30778754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 30778061 - 30778176
Alignment:
| Q |
18 |
cttacttcgtacgataagaaaagttgatttcttacgaaacataggactaacagcttctttctaaaatattaaacatctttacaaaaattgatgtcaaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30778061 |
cttacttcgtacgataagaaaagttgatttcttacgaaacataggactaacagcttctttctaaaatattaaacatctttacaaaaattgatgtcaaact |
30778160 |
T |
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| Q |
118 |
ctaatttgttagtttg |
133 |
Q |
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| T |
30778161 |
ctaatttgttagtttg |
30778176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 42603318 - 42603256
Alignment:
| Q |
307 |
cactaactaggaatcatggtaaaatactcaatgagatttgtccaccaatgatgaaaatcaaaa |
369 |
Q |
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| T |
42603318 |
cactaactaagaagcatggtaaaacactcaatgagatttgtcaaccagtaatgaaaatcaaaa |
42603256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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