View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7194_low_10 (Length: 323)

Name: NF7194_low_10
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7194_low_10
NF7194_low_10
[»] chr1 (9 HSPs)
chr1 (21-314)||(3877514-3877803)
chr1 (39-128)||(32083255-32083344)
chr1 (44-128)||(51234302-51234386)
chr1 (31-90)||(12807635-12807694)
chr1 (44-128)||(19936209-19936294)
chr1 (36-128)||(51441274-51441366)
chr1 (45-128)||(35828903-35828986)
chr1 (30-128)||(7921601-7921699)
chr1 (55-128)||(27445597-27445670)
[»] chr2 (7 HSPs)
chr2 (32-128)||(45368134-45368230)
chr2 (44-128)||(11992616-11992700)
chr2 (36-128)||(38453130-38453222)
chr2 (43-127)||(41763560-41763644)
chr2 (36-125)||(37281789-37281878)
chr2 (36-128)||(4807272-4807364)
chr2 (44-128)||(24584116-24584200)
[»] chr3 (3 HSPs)
chr3 (44-128)||(25191067-25191151)
chr3 (43-105)||(26490004-26490066)
chr3 (44-128)||(47542221-47542305)
[»] chr4 (10 HSPs)
chr4 (30-128)||(3273096-3273194)
chr4 (36-128)||(27450683-27450775)
chr4 (30-128)||(1629105-1629203)
chr4 (32-128)||(48623037-48623133)
chr4 (44-94)||(47265748-47265798)
chr4 (44-129)||(56374978-56375063)
chr4 (44-128)||(435917-436001)
chr4 (44-128)||(1777525-1777609)
chr4 (44-128)||(31960324-31960408)
chr4 (44-128)||(33226897-33226981)
[»] chr5 (4 HSPs)
chr5 (44-128)||(3394398-3394482)
chr5 (44-128)||(3301537-3301621)
chr5 (44-128)||(20318679-20318763)
chr5 (20-64)||(25937736-25937780)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-124)||(82386-82489)
[»] chr6 (6 HSPs)
chr6 (30-131)||(7079808-7079909)
chr6 (36-128)||(5258660-5258752)
chr6 (44-128)||(9706464-9706548)
chr6 (55-128)||(5631517-5631590)
chr6 (31-131)||(8811840-8811940)
chr6 (44-124)||(10100371-10100451)
[»] chr7 (3 HSPs)
chr7 (20-128)||(38606669-38606777)
chr7 (44-128)||(11593648-11593732)
chr7 (44-112)||(24177721-24177789)
[»] chr8 (3 HSPs)
chr8 (58-112)||(18124878-18124932)
chr8 (44-128)||(4033004-4033088)
chr8 (44-128)||(42854514-42854598)
[»] scaffold0896 (1 HSPs)
scaffold0896 (31-131)||(4286-4386)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 3877514 - 3877803
Alignment:
Q  21 atatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3877514 atatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtg 3877613  T
Q  121 gttgaaattaatgaatgagtttaatggaaatatggtttatgattaaacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtaact 220  Q
     |||||||||||||    ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3877614 cttgaaattaatga----gttgaaccgaaatatggtttatgattaaacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtatct 3877709  T
Q  221 agtccatgaacggacaaatcggggttcaatctcatcaatcatttgccggacccatttaaagttaaaagaagaacatgagaagagggagtataat 314  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3877710 agtccatgaaccgacatatcggggttcaatctcatcgatcatttgccggacccatttaaagttaaaagaagaacatgagaagagggagtataat 3877803  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 32083344 - 32083255
Alignment:
Q  39 cacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||||||||||| |||||||||| || |||| || ||||||||||| |||||| ||| |||||  ||||||  ||||||||||||||    
T  32083344 cacaatttaaatatcttgggtccatagtacaaaatgacggagaaatagaggcaaatgtaaatcatcgtattcaagctgggtggttgaaat 32083255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 51234302 - 51234386
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| || ||||||| |  |||| ||||||||||| |||||| || ||| |||||||||||||  ||||||||||||||    
T  51234302 tttaaatatcttgagtccatagtgcaaaatgatggagaaattgaagcagatgtaaatcatcaaattcaagttgggtggttgaaat 51234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 12807694 - 12807635
Alignment:
Q  31 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagc 90  Q
    |||| |||||||||||||||||| ||| |||||| |||||||||| | ||||||||||||    
T  12807694 acaagttacacaatttaaatatcttggatccatagtataaaacgacgaagaaatagaagc 12807635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 19936209 - 19936294
Alignment:
Q  44 tttaaatatcatgggtccataatataaaac-gatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||||||||| ||||  || ||||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  19936209 tttaaatatcttgggtccataatacaaaaatgaaggagaaatagaagcatatgtaaatcatcgtattcaagctgggtggttgaaat 19936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 51441366 - 51441274
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||| |||||||||| ||||||  | ||| |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  51441366 ttacacagtttaaatatcttgggtctttcatacaaaatgacggagaaatagaagcagatctaagccatcatattcaagctgggtggttgaaat 51441274  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 35828986 - 35828903
Alignment:
Q  45 ttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||| ||| |||||||||| || ||| ||| ||||||||||||||| || ||| ||||| ||||| || || |||||||||||    
T  35828986 ttaaacatcttgggtccatagtacaaagcgacggagaaatagaagcatatgtaaatcatcgaattcgatctgtgtggttgaaat 35828903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 7921601 - 7921699
Alignment:
Q  30 cacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||| |||||| ||||| ||||| ||| |||||| || |||||||| |||||||||||| | || |||  |||| |||||||  ||||| ||||||||    
T  7921601 cacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaaccatcgaattcaagttgggttgttgaaat 7921699  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 27445597 - 27445670
Alignment:
Q  55 tgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| || |||| |||||||||||||||||| || ||| |||||  ||||||  ||| ||||||||||    
T  27445597 tgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtattcaagttggttggttgaaat 27445670  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 45368230 - 45368134
Alignment:
Q  32 caaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||||||  |||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| | |||  ||||||  ||||||||||||||    
T  45368230 caaattacacggtttaaatatcttgggtccataatacaaaatgatggagaaatagaagcagatgtaaattatcgtattcaagctgggtggttgaaat 45368134  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 11992700 - 11992616
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||| ||| || |||| |||||||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  11992700 tttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaat 11992616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 38453222 - 38453130
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||| ||||||||||| ||||||| | ||| |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  38453222 ttacacgatttaaatatcttgggtccttcatacaaaatgacggagaaatagaagcatatgtaagccatcatattcaagctgggtggttgaaat 38453130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 41763644 - 41763560
Alignment:
Q  43 atttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaa 127  Q
    ||||||||||| |||||||||| || |||| |  ||||||||||||||| || ||| |||||  ||||||  |||||||||||||    
T  41763644 atttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaa 41763560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 37281789 - 37281878
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttga 125  Q
    ||||||| |||||||||| | | |||||| ||||||| || ||||||||||||| | || ||| |||||  ||||||  |||||||||||    
T  37281789 ttacacattttaaatatcttagctccatagtataaaatgaaggagaaatagaagtagatgtaaatcatcctattcaagttgggtggttga 37281878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 4807272 - 4807364
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||| |||||||||| ||||||  |  || |||| || ||||||||||||||| || |||  ||||  |||||| |||||||||||||||    
T  4807272 ttacacagtttaaatatcttgggtctttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagatgggtggttgaaat 4807364  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 24584200 - 24584116
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||||||| || |||| |||||||||||| | ||| || |||  ||||| ||||||  |||||||| |||||    
T  24584200 tttaaatatcttgggtccatagtacaaaatgatggagaaatataggcagatttaagccatcatattcaagctgggtggtggaaat 24584116  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 25191067 - 25191151
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||| ||| || |||| ||||||||||||||||||||| ||| |||||  ||||||  ||||||||||||||    
T  25191067 tttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcaaatgtaaatcatcgtattcaagctgggtggttgaaat 25191151  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 26490004 - 26490066
Alignment:
Q  43 atttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatca 105  Q
    ||||||||||| ||| ||||| |||||||| || ||||||||||||||| || ||| ||||||    
T  26490004 atttaaatatcttggttccatgatataaaatgacggagaaatagaagcagatgtaaatcatca 26490066  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 47542305 - 47542221
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  47542305 tttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaat 47542221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 3273096 - 3273194
Alignment:
Q  30 cacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||| |||||||||||||| ||| | |||||||| || |||||||   ||||||||||||||||||||  |||| |||||||  ||| ||||||||||    
T  3273096 cacaagttacacaatttaaacatcttaggtccatagtacaaaacgacaaagaaatagaagcaaatataaaccatcgaattcaagttggatggttgaaat 3273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 27450775 - 27450683
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||| |||| ||||| |||||||||| |  |||| |||||||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  27450775 ttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaat 27450683  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 1629105 - 1629203
Alignment:
Q  30 cacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||| ||||| | |||||||||| ||  | |||| |||||||||||||||||||||||||| || ||| |||||  ||||||  || |||||||||||    
T  1629105 cacaagttacatagtttaaatatcttgaattcatagtataaaacgatggagaaatagaagcagatgtaaatcatcgtattcaacttgagtggttgaaat 1629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 48623133 - 48623037
Alignment:
Q  32 caaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||  ||||||  ||||||||||||||    
T  48623133 caaattacacgatttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaat 48623037  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 47265798 - 47265748
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaat 94  Q
    |||||||||| ||| |||||| ||||||| || ||||||||||||||||||    
T  47265798 tttaaatatcttggatccatagtataaaatgacggagaaatagaagcaaat 47265748  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 56374978 - 56375063
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatt 129  Q
    |||||||||| ||||||| |  || |||| || ||||||||||||||| ||||||  ||||  ||||||  |||||||||||||||    
T  56374978 tttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatataagccatcgtattcaagctgggtggttgaaatt 56375063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 435917 - 436001
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  ||||||| || ||||||||||||||| || ||| |||||  ||||||  || |||||||||||    
T  435917 tttaaatatcttgggtccttcgtataaaatgacggagaaatagaagcagatgtaagtcatcgtattcaagctgagtggttgaaat 436001  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 1777609 - 1777525
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| ||  ||||||||||||||||| ||| |||||  ||||||  ||||||||||||||    
T  1777609 tttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcaaatgtaagtcatcgtattcaagctgggtggttgaaat 1777525  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 31960408 - 31960324
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  31960408 tttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaat 31960324  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 33226897 - 33226981
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  33226897 tttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaat 33226981  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 3394398 - 3394482
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||||||| || |||| || ||||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  3394398 tttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaat 3394482  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 3301537 - 3301621
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||||||| ||  ||| || ||||||||||||||| ||  || |||||  ||||||  ||||||||||||||    
T  3301537 tttaaatatcttgggtccatagtaccaaatgaaggagaaatagaagcagatgcaaatcatcgtattcaagctgggtggttgaaat 3301621  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 20318679 - 20318763
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||| ||||||  ||||||||||||||    
T  20318679 tttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattcaagctgggtggttgaaat 20318763  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 25937736 - 25937780
Alignment:
Q  20 catatcatttcacaaattacacaatttaaatatcatgggtccata 64  Q
    ||||||||| | |||||||||||| ||||||||| ||||||||||    
T  25937736 catatcattccccaaattacacaaattaaatatcttgggtccata 25937780  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 82386 - 82489
Alignment:
Q  21 atatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtg 120  Q
    |||||||  ||||| ||||||  |||||||||| |||||||||| || |||| || ||||||||||||||| || ||| |||||  ||||||  ||||||    
T  82386 atatcataccacaagttacacggtttaaatatcttgggtccatagtaaaaaatgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtg 82485  T
Q  121 gttg 124  Q
    ||||    
T  82486 gttg 82489  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 7079808 - 7079909
Alignment:
Q  30 cacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatt 129  Q
    ||||| ||||| ||||| |||||| | |||| ||| || |||||||||||||||| |||| |||| |||  ||| ||||||||  ||| |||||||||||    
T  7079808 cacaagttacaaaatttgaatatcttaggtctatagtacaaaacgatggagaaattgaaggaaatctaaaccataaaattcaagctggatggttgaaatt 7079907  T
Q  130 aa 131  Q
    ||    
T  7079908 aa 7079909  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 5258752 - 5258660
Alignment:
Q  36 ttacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||||| |||||||||| |||||||||| || |||| || ||||||||||||||  || ||  |||||  ||||||  ||||||||||||||    
T  5258752 ttacacagtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagctgatgtacatcatcgtattcaagctgggtggttgaaat 5258660  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 9706464 - 9706548
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||||||  || |||| ||||||||||||||||||  | ||| |||||  ||||||  ||||||||||||||    
T  9706464 tttaaatatcttgggtccatggtacaaaatgatggagaaatagaagcaggtgtaaatcatcgtattcaagctgggtggttgaaat 9706548  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 5631517 - 5631590
Alignment:
Q  55 tgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| || |||| || ||||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  5631517 tgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaat 5631590  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 8811940 - 8811840
Alignment:
Q  31 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatta 130  Q
    |||| ||||| |||||||||||| | |||| ||| || ||||||||||| |||| |||| |||| |||  ||| | ||||||  ||| ||||||||||||    
T  8811940 acaagttacaaaatttaaatatcttaggtctatagtacaaaacgatggataaattgaagaaaatctaaaccataagattcaagctggatggttgaaatta 8811841  T
Q  131 a 131  Q
    |    
T  8811840 a 8811840  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 10100451 - 10100371
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttg 124  Q
    |||||||||| |||||||||| || |||| |  ||||||||||||||  |||||| |||||  ||||||  ||||||||||    
T  10100451 tttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagctgatataaatcatcgtattcaagctgggtggttg 10100371  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 38606669 - 38606777
Alignment:
Q  20 catatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggt 119  Q
    |||||||| || ||| ||||||  |||||||||| |||||||||| || |||| || | ||||||||||||| || |||  ||||  ||||||  |||||    
T  38606669 catatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatagaagcagatgtaaaccatcgtattcaagctgggt 38606768  T
Q  120 ggttgaaat 128  Q
    |||||||||    
T  38606769 ggttgaaat 38606777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 11593648 - 11593732
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| ||||||| |  || |||| |||||||||||||||||| || |||  ||||  ||||||  ||||||||||||||    
T  11593648 tttaaatatcttgggtccttcgtacaaaatgatggagaaatagaagcagatgtaagccatcgtattcaagctgggtggttgaaat 11593732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 24177789 - 24177721
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaa 112  Q
    ||||||||||| ||||| ||| || |||| || ||||||||||||||| || ||| |||||| ||||||    
T  24177789 tttaaatatcacgggtcaatagtacaaaatgacggagaaatagaagcagatgtaaatcatcatattcaa 24177721  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 18124878 - 18124932
Alignment:
Q  58 gtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaa 112  Q
    |||||||||| |||| |||||||||||||||||| || ||| ||||| |||||||    
T  18124878 gtccataatacaaaatgatggagaaatagaagcagatgtaactcatcgaattcaa 18124932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 4033088 - 4033004
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    ||||| |||| ||||| |||| || | || |||||||||||| ||||| || ||| |||||| ||||||  ||||||||||||||    
T  4033088 tttaagtatcttgggttcatagtacacaatgatggagaaataaaagcatatgtaaatcatcatattcaagttgggtggttgaaat 4033004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 42854598 - 42854514
Alignment:
Q  44 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 128  Q
    |||||||||| |||||||||  || |||| | | |||||||||||||| || ||| |||||  ||||||  ||||||||||||||    
T  42854598 tttaaatatcttgggtccatcgtacaaaatgtttgagaaatagaagcagatgtaaatcatcgtattcaagctgggtggttgaaat 42854514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 4386 - 4286
Alignment:
Q  31 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatta 130  Q
    |||| ||||| |||||||||||| | |||| ||| || ||||||||||| |||| |||| |||| |||  ||| | ||||||  ||| ||||||||||||    
T  4386 acaagttacaaaatttaaatatcttaggtctatagtacaaaacgatggataaattgaagaaaatctaaaccataagattcaagctggatggttgaaatta 4287  T
Q  131 a 131  Q
    |    
T  4286 a 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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