View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_low_11 (Length: 317)
Name: NF7194_low_11
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_low_11 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 14455572 - 14455872
Alignment:
| Q |
11 |
ataacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgattatcctcctagcaggtatggaatgtggaacctgagtgg |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14455572 |
ataacatcacaggtgcggtcatttcaattgatctccataatccacatccaccatcatttgattatcctcctagcaggtatggaatgtggaacctgagtgg |
14455671 |
T |
|
| Q |
111 |
tgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattcctaattttttaggatca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14455672 |
tgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattcctaattttttaggatca |
14455771 |
T |
|
| Q |
211 |
ttggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgcaatctcttcatctca |
310 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
14455772 |
ttggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcgcttgcaatctcttgatctca |
14455871 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
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| T |
14455872 |
c |
14455872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 97 - 311
Target Start/End: Complemental strand, 14495692 - 14495478
Alignment:
| Q |
97 |
tggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattccta |
196 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14495692 |
tggaaactgagtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacatttggtgaaattccaattccta |
14495593 |
T |
|
| Q |
197 |
attttttaggatcattggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgca |
296 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
14495592 |
agtttttaggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcacttgca |
14495493 |
T |
|
| Q |
297 |
atctcttcatctcac |
311 |
Q |
| |
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|||| || ||||||| |
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| T |
14495492 |
atctattgatctcac |
14495478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 14471357 - 14471059
Alignment:
| Q |
11 |
ataacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgattatcctcctagcaggtatggaatgtggaacctgagtgg |
110 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||||||||| ||| | | ||| | ||| | |||| | || ||||| |||||||||||| |||| |
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| T |
14471357 |
ataacatcacaggtgcggtcgttgcaattgatctccataacccgtatcgaaaaccatatcattcttctccgaacaagtatgaaatgtggaacctacgtgg |
14471258 |
T |
|
| Q |
111 |
tgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattcctaattttttaggatca |
210 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||| | | ||| ||||| ||||| |||||||||||| |
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| T |
14471257 |
tgagctaagaccgtctttgatgaaactcaaatcactaaggcatttagacttgagcttcaacacattcagagcaataccaatacctaagtttttaggatca |
14471158 |
T |
|
| Q |
211 |
ttggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgcaatctcttcatctc |
309 |
Q |
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|| || ||||| |||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
14471157 |
ttagtaaatttacaatatctgaacctttcaaatgctggatttgctggtttaattccaccccatttgggaaatctttctcacttgcaatctcttgatctc |
14471059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 14460071 - 14460361
Alignment:
| Q |
11 |
ataacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgattatcctcctagcaggtatggaatgtggaacctgagtgg |
110 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| | ||||||| | ||||| ||||||||||| ||||| |
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| T |
14460071 |
ataacatcacaggcgcggtcgtttcaatcgatctccataacccacatccggtgctctttgattcttctcctagaaagtatgaaatgtggaaccaaagtgg |
14460170 |
T |
|
| Q |
111 |
tgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattcctaattttttaggatca |
210 |
Q |
| |
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||||||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||| || ||| |||||||| | || || |||||| |
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| T |
14460171 |
tgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacattcaatggaataccaattcccgagttctttggatca |
14460270 |
T |
|
| Q |
211 |
ttggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgcaatctcttcatctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| |
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| T |
14460271 |
ttggtgaatttgcaatatctgaacctgtcaac---------tgctggtttaattccaccccatttgggaaacctttctcacttgcaatatcttgatctca |
14460361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 14495754 - 14495692
Alignment:
| Q |
11 |
ataacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgatt |
73 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14495754 |
ataacaacacaggcgcggtcatttcaatcgatctccataacccgcatccaccgtcatttgatt |
14495692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 9650 - 9941
Alignment:
| Q |
11 |
ataacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgattatcctcctagcaggtatggaatgtggaacctgagtgg |
110 |
Q |
| |
|
||||||||||| | |||| | |||||||||||||||||||||| ||||| ||||||| | ||||||| | ||||| ||||||||||| ||||| |
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| T |
9650 |
ataacatcacaagcgcggacgtttcaatcgatctccataacccacatccggtgctctttgattcttctcctagaaagtatgaaatgtggaaccaaagtgg |
9749 |
T |
|
| Q |
111 |
tgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattcctaattttttaggatca |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||| || ||| |||||||| | || || |||||| |
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|
| T |
9750 |
tgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacattcaatggaataccaattcccgagttctttggatca |
9849 |
T |
|
| Q |
211 |
ttggtgaatttgcaatatctgaacctctcaactgctggctttgctggtttaattccacctcatttgggaaacctttctcgcttgcaatctcttcatctca |
310 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |
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| T |
9850 |
ttggtgaatttgcaatatctgaacctgtcaac---------tgctggtttaattccaccccatttgggaaacctttctctcttgcaatctcttgatctca |
9940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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