View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_low_14 (Length: 276)
Name: NF7194_low_14
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 17513647 - 17513899
Alignment:
| Q |
11 |
agaatattataaaggatacaaatcatcaatgaaattctacggttaactttaannnnnnnnn--gaaaggagagttaactttacaaatactataagatata |
108 |
Q |
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| T |
17513647 |
agaatattataaaggatacaaatcatcaaagaaattttacggttaactctactttttttttttgaaaggagagttaactttacaaatactataagatata |
17513746 |
T |
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| Q |
109 |
gtctcataa-ttttattgcaactaaatatcatataaatgtaaaatattcacctaaattatcaagagcaaacctaatttgattctcctcccaacaccaaga |
207 |
Q |
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| T |
17513747 |
gtctcataaattttattgcaactaaatatcatataaatgtaaaatattcacctaaattatcaagagcaaacctaatttgattctcctcccaacaccaaga |
17513846 |
T |
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| Q |
208 |
ctatggaagaccttaaagagaccacccgcccatcctatctacctagtaacacc |
260 |
Q |
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| T |
17513847 |
ctatggaagaccttaaagagagcacccgcccatcctatctacctagtgacacc |
17513899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 17521677 - 17521779
Alignment:
| Q |
78 |
agagttaactttacaaatactataagatatagtctcataa-ttttattgcaactaaatatcatataaatgtaaaatattcacctaaattatcaagagcaa |
176 |
Q |
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| T |
17521677 |
agagttaactttacaaatactataagatatcctttaataaattttattgcaactaactatcatataaatgtaggttattcaccaaagttatcaagagcaa |
17521776 |
T |
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| Q |
177 |
acc |
179 |
Q |
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| T |
17521777 |
acc |
17521779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 16855536 - 16855606
Alignment:
| Q |
190 |
ctcctcccaacaccaagactatggaagaccttaaagagaccacccgcccatcctatctacctagtaacacc |
260 |
Q |
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| T |
16855536 |
ctcctcccaacaccaagactatggaagacctcaaagagaccagtctccaatcctaactacctagtgacacc |
16855606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 17523709 - 17523795
Alignment:
| Q |
174 |
caaacctaatttgattctcctcccaacaccaagactatggaagaccttaaagagaccacccgcccatcctatctacctagtaacacc |
260 |
Q |
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||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||| || ||| ||||| ||||| ||| ||||| |
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| T |
17523709 |
caaacctaacttgaccctcctcccaacaccaagactttggaagacctcgaagagaccaacctcccgtcctaactacccagtgacacc |
17523795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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