View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_low_6 (Length: 404)
Name: NF7194_low_6
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 393
Target Start/End: Original strand, 14455925 - 14456313
Alignment:
| Q |
5 |
ttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgcacc |
104 |
Q |
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| T |
14455925 |
ttgaaatatcttgtcatgaatggagttgacctttcattagtagcagaaacaaactgggttagttcattaagccaatttccttttttaatagaattgcatc |
14456024 |
T |
|
| Q |
105 |
tatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttcaaa |
204 |
Q |
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|| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||| ||||| ||| || |
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| T |
14456025 |
tacatttctgtcagctttttggtcatattccatctcccccgtctcacaattttacttcacttgctgttctagatcttagtattaatagctttgtttccaa |
14456124 |
T |
|
| Q |
205 |
gatacctgaatggcttactaatattagcaccctacaacaaatcgacataggaaacagtggtctgtatggccaaataccacttggtttaagagacctacca |
304 |
Q |
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| T |
14456125 |
gatacccgattggcttactaatattagcaccctacaacaaatcgacataggaaacagtggtctgtatggacaaataccacttggtttaagagacctacca |
14456224 |
T |
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| Q |
305 |
aagctacaatatttgaacttatgggacaaccaaaatctcacagcaaattgttctcaactcttcatgagaggatgggaaaagacacaggt |
393 |
Q |
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| T |
14456225 |
aagctacaatatttgaacttatgggacaaccaaaatctcacagcaaattgttctcaactcttcatgagaggatgggaaaagacacaggt |
14456313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 379
Target Start/End: Complemental strand, 14470913 - 14470630
Alignment:
| Q |
96 |
aattgcacctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactt |
195 |
Q |
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| T |
14470913 |
aattgcatctatcttcttgcaaactttttggtcatattccatcccccacatctctcaattttacttcacttgctgttttagatcttagttctaataactt |
14470814 |
T |
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| Q |
196 |
tgcttcaaagatacctgaatggcttactaatattagcaccctacaacaaatcgacataggaaacagtggtctgtatggccaaataccacttggtttaaga |
295 |
Q |
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|| ||||||||||||||| ||| || ||||||||||||||| ||| || |||||| | | ||||| ||||||| |||||||||||||||||||| |
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| T |
14470813 |
tgtttcaaagatacctgattgggttgtaaatattagcaccctaacacatattgacataagcagtggtggtttgtatggaaaaataccacttggtttaaga |
14470714 |
T |
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| Q |
296 |
gacctaccaaagctacaatatttgaacttatgggacaaccaaaatctcacagcaaattgttctcaactcttcatgagaggatgg |
379 |
Q |
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| T |
14470713 |
gacctaccaaacttaaagtttttgagtttagggggtaatggaaatctcacagccaattgttctcaactcttcatgagaggatgg |
14470630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 2 - 383
Target Start/End: Complemental strand, 14495428 - 14495047
Alignment:
| Q |
2 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
101 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| | ||||||| |||| ||| |||||||||| ||| ||| |||| |||||||||||||||| |
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| T |
14495428 |
tctttgaaatatcttgccatggatggagttgacctttcatcggtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgc |
14495329 |
T |
|
| Q |
102 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttc |
201 |
Q |
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| ||||||| || || |||||||| || ||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||| ||||| ||| ||| |
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| T |
14495328 |
atctatcttcttgccatctttttggccaaatttcatctccttcatctctcaattttacttcacttgcttttctaaatcttagttctaatgcttttttttc |
14495229 |
T |
|
| Q |
202 |
aaagatacctgaatggcttactaatattagcaccctacaacaaatcgacataggaaacagtggtctgtatggccaaataccacttggtttaagagaccta |
301 |
Q |
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||||||||| | ||||| ||||||||||||| || |||| || ||||| |||| |||||| | ||||| |||||||||||||||||||||||| |
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| T |
14495228 |
caagatacctaattggctagttaatattagcaccttagaacatattgacatgagaaatagtggtttctatggaacaataccacttggtttaagagacctt |
14495129 |
T |
|
| Q |
302 |
ccaaagctacaatatttgaacttatgggacaaccaaaatctcacagcaaattgttctcaactcttcatgagaggatgggaaa |
383 |
Q |
| |
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|| ||| || |||||| | ||| | ||| | ||||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
14495128 |
cctaagttatggtatttggatttaggctttaactacaatctcatagcaagttgttctcaactcttcatgaaaggatgggaaa |
14495047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 14460412 - 14460645
Alignment:
| Q |
2 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
101 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| | |||||||| |||| ||| |||||||||| ||| ||| |||| |||||||||||||||| |
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| T |
14460412 |
tctttgaaatatcttgccatgaatggagttgacctttcatcagtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgc |
14460511 |
T |
|
| Q |
102 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttc |
201 |
Q |
| |
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| ||||||| || || |||||||| || ||| ||||||| |||||| ||||||||||||||||||| ||||| | ||||| ||||| ||| ||| |
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| T |
14460512 |
atctatcttcttgccatctttttggccaaatttcatctccttcatctctcaattttacttcacttgcttttctaaaccttagttctaatgcttttttttc |
14460611 |
T |
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| Q |
202 |
aaagatacctgaatggcttactaatattagcacc |
235 |
Q |
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||||||||| | |||||| ||||||||||||| |
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| T |
14460612 |
caagatacctaattggcttgttaatattagcacc |
14460645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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