View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7194_low_9 (Length: 333)
Name: NF7194_low_9
Description: NF7194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7194_low_9 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 18564381 - 18564696
Alignment:
| Q |
1 |
gcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtcaaaattccatattatactgcataaatagattcatacataattgaat |
100 |
Q |
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| T |
18564381 |
gcacccaagcccacgtctgtctcaagccttcattttctttaaatatcatttgtcaaaattccatattatactgcatgaatcgattcatacataactgaat |
18564480 |
T |
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| Q |
101 |
cgtatcacaaagtctctgaatttgtgtgaatcgattcatgacatgtgtgaatcgatcgactctgatttatcccaaaaatgcatgaatcgtatcatcatat |
200 |
Q |
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| T |
18564481 |
cgtatcacaaagtctctgactttgtgtgaatcgattcatgacatgtgtaaatcgattcactctgctttatctcaaaaatgcatgaatcgtatcatcatat |
18564580 |
T |
|
| Q |
201 |
gtctctgatttatttggagtccattcacgttgttttgaatcgtatcaacattcactctgggaagtctgaatccactcaaaaatcatttgatgcgtattaa |
300 |
Q |
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|||||| | |||||| |||| |||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||| || |
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| T |
18564581 |
gtctctaacttattttgagttgattcacactgttttgaattgtatcaacattcactctgggacgtctgaatcgactcaaaaattatttgatgtgtatcaa |
18564680 |
T |
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| Q |
301 |
tcttcaatgcattctc |
316 |
Q |
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|||||||||||||||| |
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| T |
18564681 |
tcttcaatgcattctc |
18564696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 7311430 - 7311114
Alignment:
| Q |
1 |
gcacccaagcccacgtgtgtctcaagccttccttttctttgaatatcatttgtcaaaattccatattatactgcataaatagattcatacataattgaat |
100 |
Q |
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| T |
7311430 |
gcaccctagcctacgtgtgcctctaaccttccttttgtttgcatatcatttgtcaaaatttcatatttcactgcatgaatcgattcatacacatctgaat |
7311331 |
T |
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| Q |
101 |
cgtatcacaaa-gtctctgaatttgtgtgaatcgattcatgacatgtgtgaatcgatcgactctgatttatcccaaaaatgcatgaatcgtatcatcata |
199 |
Q |
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| T |
7311330 |
cgtatcacaaaagtctctgactttgtgtgaatcgatgcataacatgtctgaatcgattcactttgattaaactcaaaaatgcatgaaatgtatcatcatt |
7311231 |
T |
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| Q |
200 |
tgtctctgatttatttggagtccattcacgttgttttgaatcgtatcaacattcactctgggaagtctgaatccactcaaaaatcatttgatgcgtatta |
299 |
Q |
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| T |
7311230 |
tgtctctgactcactttgagtcgattcactatgttatgaatcgtatcaacattcatcctgggcagtctgaatcgactcaaaattcatttgatgcgtatca |
7311131 |
T |
|
| Q |
300 |
atcttcaatgcattctc |
316 |
Q |
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||||||| |||||||| |
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| T |
7311130 |
atcttcatagcattctc |
7311114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 125 - 315
Target Start/End: Complemental strand, 98686 - 98498
Alignment:
| Q |
125 |
tgtgaatcgattcatgacatgtgtgaatcgatcgactctgatttatcccaaaaatgcatgaatcgtatcatcatatgtctctgatttatttggagtccat |
224 |
Q |
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||||||||||||||||||||| | ||||||| | |||| |||||| ||||||||||||| |||||||||||| |||||| | |||| |||| || |
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| T |
98686 |
tgtgaatcgattcatgacatgactaaatcgattcattctgttttatctcaaaaatgcatgagtcgtatcatcat--gtctctaacctattctaagtcgat |
98589 |
T |
|
| Q |
225 |
tcacgttgttttgaatcgtatcaacattcactctgggaagtctgaatccactcaaaaatcatttgatgcgtattaatcttcaatgcattct |
315 |
Q |
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|||| || ||||||||||||||||||| | ||| ||||||||||||| | ||||| |||||||||||| ||| |||||||| ||||||| |
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| T |
98588 |
tcacactggtttgaatcgtatcaacatttattctaggaagtctgaatcgattcaaatatcatttgatgcatatcaatcttcatagcattct |
98498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 831280 - 831137
Alignment:
| Q |
111 |
agtctctgaatttgtgtgaatcgattcatgacatgtgtgaatcgatcgactctgatttatcccaaaaatgcatgaatcgtatcatcatatgtctctgatt |
210 |
Q |
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||||||||| |||||||||| |||||||| |||||| |||||||| | ||||||| || || |||||||||||||||||||||| | |||||||||| | |
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| T |
831280 |
agtctctgactttgtgtgaaacgattcataacatgtatgaatcgaccaactctgacttgtctcaaaaatgcatgaatcgtatcactagatgtctctgact |
831181 |
T |
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| Q |
211 |
tatttggagtccattcacgttgttttgaatcgtatcaacattca |
254 |
Q |
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| T |
831180 |
tagtttgaatcgattcattttattttgaattgtatcaacattca |
831137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 1196460 - 1196317
Alignment:
| Q |
111 |
agtctctgaatttgtgtgaatcgattcatgacatgtgtgaatcgatcgactctgatttatcccaaaaatgcatgaatcgtatcatcatatgtctctgatt |
210 |
Q |
| |
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||||||||| |||||||||| |||||||| |||||| |||||||| | ||||||| || || |||||||||||||||||||||| | |||||||||| | |
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| T |
1196460 |
agtctctgactttgtgtgaaacgattcataacatgtatgaatcgaccaactctgacttgtctcaaaaatgcatgaatcgtatcactagatgtctctgact |
1196361 |
T |
|
| Q |
211 |
tatttggagtccattcacgttgttttgaatcgtatcaacattca |
254 |
Q |
| |
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|| || || || ||||| || |||||||| ||||||||||||| |
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| T |
1196360 |
tagtttgaatcgattcattttattttgaattgtatcaacattca |
1196317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 8942265 - 8942381
Alignment:
| Q |
174 |
aaaaatgcatgaatcgtatcatcatatgtctctgatttatttggagtccattcacgttgttttgaatcgtatcaacattcactctgggaagtctgaatcc |
273 |
Q |
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||||||||| || ||||||||| |||||| ||||| |||| || || ||||| ||||||||||||||||||| |||| ||||| || |||||| |
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| T |
8942265 |
aaaaatgcaggagtcgtatcataatatgtttctgacttatcctgaatcgattcaaactgttttgaatcgtatcaaccttcatcctgggcagcttgaatcg |
8942364 |
T |
|
| Q |
274 |
actcaaaaatcatttga |
290 |
Q |
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| T |
8942365 |
actcaaaaatcatttga |
8942381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 16740373 - 16740302
Alignment:
| Q |
82 |
gattcatacataattgaatcgtatcac-aaagtctctgaatttgtgtgaatcgattcatgacatgtgtgaat |
152 |
Q |
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|||||||||| | |||||||||||||| ||||| ||| | ||||||||||| |||||||||| | ||||||| |
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| T |
16740373 |
gattcatacacatttgaatcgtatcacaaaagtttctaactttgtgtgaattgattcatgacttctgtgaat |
16740302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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