View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7195_low_1 (Length: 465)
Name: NF7195_low_1
Description: NF7195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7195_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 43856584 - 43856148
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856584 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
43856485 |
T |
|
| Q |
114 |
tctactttcagtaaaaagacaaaaatatcacataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgcgttcatttatc |
213 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856484 |
tctactttcagtataaagacaaaaatatcacataatccgcacaatgcacatgacagtcgaactaaaatacattatttacattttgtcgcgttcatttatc |
43856385 |
T |
|
| Q |
214 |
gagcaataacaacttttaactatgaatcacggtatcacattaggcataaatcaacatcaaagttaaatttaaaatttcataacagtagcataatctggtg |
313 |
Q |
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|
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856384 |
gagcaataacaacgtttaactatgaatcccggtatcgcattaggcataaatcaacatcaaagttaaatttaaaatttcataacagtagcataatctggtg |
43856285 |
T |
|
| Q |
314 |
accttacctctccaaggaacgtagaagacagaaggacagaaaagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856284 |
accttacctctccaaggaacgtagaagacagaaggacagaaaagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagact |
43856185 |
T |
|
| Q |
414 |
catgttagtgaaaaggttccctaatgtatgtaccaaa |
450 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
43856184 |
catgttagtgaaaagattccctaatgtatgtaccaaa |
43856148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 14243955 - 14244142
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
| |
|
||||||| |||||||||| ||| || ||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||||| ||||||||||| |
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|
| T |
14243955 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatctattgatgctaaaa--agtcatttgttttt-caattttgagt |
14244049 |
T |
|
| Q |
114 |
tctactttcagtaaaaagacaaaaatatcacata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
202 |
Q |
| |
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|||| ||||||| |||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
14244050 |
tctaatttcagtctaaagacaaaaatatcacatacataattcgcacaacgcacatgacagtcgaactaaaatagaatatttacattttgtcgc |
14244142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 1875061 - 1874895
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
1875061 |
atataaagaataaaatgacaaattt--gtttgtacatttcctttggttccacaccgtctattgatgctaaaataagtcatttgttttt-caattttgagt |
1874965 |
T |
|
| Q |
114 |
tctactttcagtaaaaagacaaaaatatcac----ataatccgcacaatgcacatgacagttgaactaaa |
179 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
1874964 |
tctactatcagtataaagacaaaaatatcacataaataatccgcacaatgcacatgagagtcgaactaaa |
1874895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 6354505 - 6354692
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
| |
|
||||||| |||||||||| ||| || ||||||||||||||||||||||||| | || ||| ||||||||| | ||||||||||| ||||||| |||| |
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| T |
6354505 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatcaattgatgctaaaa--agtcatttgtttt-tcaatttagagt |
6354599 |
T |
|
| Q |
114 |
tctactttcagtaaaaagacaaaaatatc----acataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
202 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||| ||||||| | |||||||||| ||||||||||| | ||||||||||||||||| |
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|
| T |
6354600 |
tctaatttcagtataaagacaaaaatatcacatacataattcgcacaacgaacatgacagtcgaactaaaatagaatatttacattttgtcgc |
6354692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 34910134 - 34910010
Alignment:
| Q |
319 |
acctctccaaggaacgtagaagacagaaggacagaaaagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgt |
418 |
Q |
| |
|
||||||||||||||| | | ||| || | ||||||||||||||||||||| | ||||| || |||||||| || ||||| ||||||||||||||||| | |
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| T |
34910134 |
acctctccaaggaacatggcagaaaggatgacagaaaagaaaggctccatagctttaattgtgtgagtaaatgacacagccacctttccaagactcatat |
34910035 |
T |
|
| Q |
419 |
tagtgaaaaggttccctaatgtatg |
443 |
Q |
| |
|
| |||||||| ||||| || ||||| |
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| T |
34910034 |
tggtgaaaagattccccaaagtatg |
34910010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 443
Target Start/End: Complemental strand, 780395 - 780307
Alignment:
| Q |
355 |
aagaaaggctccattgatttaacagtatgagtaaaagagacagcaacctttccaagactcatgttagtgaaaaggttccctaatgtatg |
443 |
Q |
| |
|
|||||||| ||||| ||||| | || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||| |
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| T |
780395 |
aagaaaggttccatagatttgatggtgtgagtgaaagatacggcaaccttgccaagactaatgttcgtcaaaaggttccctaatgtatg |
780307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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