View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7195_low_3 (Length: 292)

Name: NF7195_low_3
Description: NF7195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7195_low_3
NF7195_low_3
[»] chr2 (12 HSPs)
chr2 (1-276)||(7073428-7073710)
chr2 (1-75)||(32764935-32765009)
chr2 (1-75)||(32766291-32766365)
chr2 (1-74)||(31091579-31091652)
chr2 (1-83)||(24458049-24458131)
chr2 (1-74)||(17330282-17330355)
chr2 (4-71)||(31090165-31090232)
chr2 (1-77)||(39016431-39016509)
chr2 (1-70)||(38854791-38854860)
chr2 (1-73)||(24459498-24459570)
chr2 (1-75)||(5915044-5915118)
chr2 (1-65)||(38853762-38853826)
[»] chr3 (18 HSPs)
chr3 (1-74)||(2591625-2591698)
chr3 (1-75)||(55388070-55388144)
chr3 (1-74)||(36278950-36279023)
chr3 (1-75)||(2592059-2592133)
chr3 (1-74)||(49261586-49261659)
chr3 (1-84)||(48572973-48573056)
chr3 (1-74)||(52316977-52317050)
chr3 (1-77)||(48808359-48808437)
chr3 (1-75)||(17701971-17702045)
chr3 (1-75)||(33428487-33428561)
chr3 (1-74)||(17700516-17700589)
chr3 (1-84)||(19331096-19331179)
chr3 (1-77)||(19114528-19114604)
chr3 (5-75)||(47118107-47118177)
chr3 (1-75)||(52318369-52318443)
chr3 (1-74)||(19115198-19115271)
chr3 (1-74)||(45600990-45601063)
chr3 (1-77)||(47075403-47075479)
[»] chr7 (18 HSPs)
chr7 (1-70)||(43457459-43457528)
chr7 (1-74)||(48647495-48647568)
chr7 (1-84)||(42477369-42477452)
chr7 (1-75)||(7258272-7258346)
chr7 (1-76)||(48777252-48777327)
chr7 (2-74)||(45583682-45583754)
chr7 (4-75)||(44334504-44334575)
chr7 (1-73)||(44333138-44333210)
chr7 (1-71)||(30925060-30925130)
chr7 (4-85)||(12223754-12223835)
chr7 (1-70)||(34704911-34704980)
chr7 (4-77)||(35727694-35727767)
chr7 (1-74)||(35729138-35729211)
chr7 (1-70)||(48646051-48646120)
chr7 (1-60)||(8374926-8374985)
chr7 (1-71)||(46286504-46286574)
chr7 (1-70)||(7259736-7259805)
chr7 (4-73)||(19433989-19434058)
[»] chr1 (8 HSPs)
chr1 (1-74)||(32665822-32665895)
chr1 (1-77)||(9339641-9339717)
chr1 (2-74)||(52439477-52439549)
chr1 (1-77)||(10333238-10333314)
chr1 (1-74)||(5782412-5782485)
chr1 (4-74)||(10332984-10333054)
chr1 (1-76)||(7945606-7945681)
chr1 (1-74)||(3117647-3117720)
[»] chr4 (9 HSPs)
chr4 (1-74)||(42278047-42278120)
chr4 (1-76)||(53771101-53771176)
chr4 (1-83)||(47874553-47874635)
chr4 (1-74)||(31844720-31844793)
chr4 (1-76)||(19051283-19051358)
chr4 (1-76)||(31845007-31845082)
chr4 (1-77)||(4703269-4703345)
chr4 (1-35)||(54574462-54574496)
chr4 (1-73)||(47878536-47878608)
[»] chr8 (9 HSPs)
chr8 (4-74)||(41753996-41754066)
chr8 (1-76)||(35177391-35177466)
chr8 (1-75)||(32898497-32898571)
chr8 (1-70)||(1953022-1953090)
chr8 (1-74)||(41754847-41754919)
chr8 (1-73)||(10407636-10407708)
chr8 (1-70)||(5965494-5965563)
chr8 (1-74)||(35178856-35178929)
chr8 (7-35)||(10405619-10405647)
[»] chr6 (1 HSPs)
chr6 (1-75)||(30747996-30748070)
[»] chr5 (13 HSPs)
chr5 (1-75)||(21069286-21069360)
chr5 (1-74)||(8074449-8074522)
chr5 (2-75)||(546089-546161)
chr5 (1-74)||(9538101-9538174)
chr5 (2-74)||(40612712-40612784)
chr5 (1-75)||(16611725-16611799)
chr5 (1-74)||(2464667-2464740)
chr5 (1-74)||(4592859-4592932)
chr5 (1-74)||(28591166-28591239)
chr5 (5-76)||(14891199-14891270)
chr5 (2-75)||(13651173-13651245)
chr5 (1-35)||(19182987-19183021)
chr5 (1-29)||(544691-544719)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-73)||(116054-116126)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7073710 - 7073428
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaatatccgataaaagtaaa 100  Q
    ||||||||||||| || ||||||||||||||||||  |||||| ||||| | ||||||||||||||||||||| |||||||||||||| || ||||||||    
T  7073710 ttgtatttaatcccgaatcagagacctatgcgacagtaagctgcagaatgaaggactaaagtgactatttgcttaaacaaaaatatcctatgaaagtaaa 7073611  T
Q  101 gtatgactgactattnnnnnnngaattagaaaacaattatagtatagagatgagaggaggaatatgttaaatttgttcctgaagcaatgacggacctata 200  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7073610 gtatgactgactattaaaaaaagaattagaaaacaattatagtatagagatgagaggaggaatatgttaaatttgttcctgaagcaatgacggacctatt 7073511  T
Q  201 aattttgagtggtaaagacaatatatatac----tcccttcagtttttattat---aaagaaaaattgaatgacggataaaat 276  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||   ||| |||||||||||||||||||||||    
T  7073510 aattttgagtggtaaagacaatatatatatatattcccttcagtttttattataaaaaaaaaaaattgaatgacggataaaat 7073428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32765009 - 32764935
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||||||||||||||| ||||    
T  32765009 ttgtatttaatcctgagtcagagacctatatgacaactagctgcagaatcagggactaaagtgactatttactca 32764935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32766291 - 32766365
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||||||||||||| |||||||| |||||| || || ||| |||||||| ||||||||||||||||||    
T  32766291 ttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcagggaccaaagtgactatttgctca 32766365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31091579 - 31091652
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| |||| |||| || ||| |||||||| |||||||||||||||||    
T  31091579 ttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagggaccaaagtgactatttgctc 31091652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24458131 - 24458049
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaa 83  Q
    |||||||||||  |||||||| |||||||| || | | ||||| | ||||||||||||||||||||||||||||||| |||||    
T  24458131 ttgtatttaattttgagtcagggacctatgtgatagcgagctgcataatcagggactaaagtgactatttgctcaaaaaaaaa 24458049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17330282 - 17330355
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| ||||   ||||| ||||||| ||||||||| ||||||||||||    
T  17330282 ttgtatttaatcctgagtcagggacctatgtgacagtgagctgcagaatcaaggactaaagcgactatttgctc 17330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 31090232 - 31090165
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttg 71  Q
    |||||||||||||||||  |||||||| |||| | ||||| |||||||||||||||| ||||||||||    
T  31090232 tatttaatcctgagtcaaggacctatgtgacagcgagctgcagaatcagggactaaattgactatttg 31090165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39016431 - 39016509
Alignment:
Q  1 ttgtatttaatcctgagtcagagacct--atgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    ||||||||||||||||||||||||  |  ||| |||| | ||||| |||||||| ||||||||||||||||||||||||    
T  39016431 ttgtatttaatcctgagtcagagagatgtatgtgacagcgagctgcagaatcagagactaaagtgactatttgctcaaa 39016509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38854860 - 38854791
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    |||||||||||||||||||| |||||| |  |||||| |  |||||| |||||||| |||||||||||||    
T  38854860 ttgtatttaatcctgagtcaaagacctttatgacaacgaagtgtagagtcagggaccaaagtgactattt 38854791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24459498 - 24459570
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    |||||||||||||||| |||| |||||||| |||| | || || ||| |||||||| ||||||||| ||||||    
T  24459498 ttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtcagggaccaaagtgactctttgct 24459570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5915044 - 5915118
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||| |||||||| ||||||||  || | | || || ||| ||| |||||||||||||||||||||||    
T  5915044 ttgtatttaattctgagtcaaagacctatttgaaagcgaggtgcagagtcatggactaaagtgactatttgctca 5915118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38853826 - 38853762
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgac 65  Q
    ||||||||||||||||||||||||||| |  |||||  |  |||||| |||||||| ||||||||    
T  38853826 ttgtatttaatcctgagtcagagacctttatgacaatgaagtgtagagtcagggaccaaagtgac 38853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2591698 - 2591625
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  2591698 ttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggactaaagtgactatttgctc 2591625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 55388144 - 55388070
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||||||||||||||  |||| | ||||| |||||||||||||||||||||||||||||||    
T  55388144 ttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcagggactaaagtgactatttgctca 55388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36279023 - 36278950
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  36279023 ttgtatttaatcctgaatcagggacctatgtgacaacgagctgtataatcagggactaaagtgactatttgctc 36278950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2592059 - 2592133
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||||||||||||| |||||||| |||| | ||||| ||||| |||||||||||||||||||||||||    
T  2592059 ttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattagggactaaagtgactatttgctca 2592133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 49261586 - 49261659
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| ||||||||  ||| |||| | ||||||||||||||||||||||    
T  49261586 ttgtatttaatcctgagtcagggacctatgtgacaacaatgtgtggaattatggactaaagtgactatttgctc 49261659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 48573056 - 48572973
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaat 84  Q
    ||||||||||||||||||||| |||||||| || ||| || || ||| |||||||| |||||||||||||||| ||| ||||||    
T  48573056 ttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtcagggaccaaagtgactatttgctaaaaaaaaaat 48572973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 52317050 - 52316977
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| ||||||||||||||||  |||| | ||||| |||||||| ||||||||||| |||||||||    
T  52317050 ttgtatttaatcatgagtcagagacctatatgacagcgagctgcagaatcagagactaaagtgattatttgctc 52316977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48808437 - 48808359
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggac--taaagtgactatttgctcaaa 77  Q
    |||||||||||||||||||||||||||||   ||| | ||||| ||||||||||||  |||||||| ||||||||||||    
T  48808437 ttgtatttaatcctgagtcagagacctatctaacagcgagctgcagaatcagggactataaagtgattatttgctcaaa 48808359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17701971 - 17702045
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||| |||||||| |||||||  |||| | ||||| |||||||| ||||||||||||||||| ||||    
T  17701971 ttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagagactaaagtgactatttactca 17702045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33428487 - 33428561
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||| ||||||||| |||||||| |||||| || || ||| |||||||| |||||||| |||||||||    
T  33428487 ttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggacgaaagtgaccatttgctca 33428561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17700589 - 17700516
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||||||||  ||||||| |||||| || || ||| |||  |||||||||||||||||||||    
T  17700589 ttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcagagtcaaagactaaagtgactatttgctc 17700516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19331179 - 19331096
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaat 84  Q
    ||||||||||||||||||||| |||||||| |||| |||| || ||| ||||| || ||||||  |||||| ||||| ||||||    
T  19331179 ttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaacgaaagtggttatttggtcaaaaaaaaat 19331096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19114604 - 19114528
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    |||||||||||| |||||||| ||||| || |||||| |  || ||| ||||||||||||||||  |||||||||||    
T  19114604 ttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaagtgatcatttgctcaaa 19114528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 47118107 - 47118177
Alignment:
Q  5 atttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||||||| | ||| |||  |||||| || || ||| ||||||||||||||||| |||||||||    
T  47118107 atttaatcctgagtcggggacttatatgacaacgaggtgcagagtcagggactaaagtgaccatttgctca 47118177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52318369 - 52318443
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||||||||||||| || ||||| |||| | |  || ||| |||| ||| ||||||||||||||||||    
T  52318369 ttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagaccaaagtgactatttgctca 52318443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19115198 - 19115271
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||||| |  |||||||| |||| | || || ||| ||| | ||||||||||||||||||||    
T  19115198 ttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtcacgaactaaagtgactatttgctc 19115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45600990 - 45601063
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||| |||| |||||||| |||| | ||    ||| ||||||||||||||||| ||||||||    
T  45600990 ttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaagtgacgatttgctc 45601063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47075403 - 47075479
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    |||||||||||| ||||| |  |||||||| |||||| || || ||| ||| ||| ||||||||| |||||||||||    
T  47075403 ttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtcaaggattaaagtgaccatttgctcaaa 47075479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43457528 - 43457459
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    ||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  43457528 ttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagtgactattt 43457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48647495 - 48647568
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| || | | |||||||||||||||| |||||||||||||||||||    
T  48647495 ttgtatttaatcctgagtcagggacctatgtgatagcgagctgtagaatcagggtctaaagtgactatttgctc 48647568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42477452 - 42477369
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||| || || ||| ||| |||| ||| ||| |||||||||||| ||||||    
T  42477452 ttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtcaaggaccaaattgattatttgctcaaataaaaat 42477369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7258346 - 7258272
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||| || |||||||| |||||| || |||||| |||||||| ||||||||||||||||||    
T  7258346 ttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtcagggaccaaagtgactatttgctca 7258272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48777327 - 48777252
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    |||||||||||| |||||||| ||| |||| |||| | ||||| |||||||| |||||||||||||||||||||||    
T  48777327 ttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagagactaaagtgactatttgctcaa 48777252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 45583754 - 45583682
Alignment:
Q  2 tgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||| ||||||||| |||||||| || | | | ||| ||||||||||||||||||||||||||||||    
T  45583754 tgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtgactatttgctc 45583682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 44334504 - 44334575
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||| |||||||| ||||||||  ||| | ||||| ||||||||| |||||||||||||||||||||    
T  44334504 tatttaatcatgagtcagggacctatgtaacagcgagctgcagaatcaggaactaaagtgactatttgctca 44334575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44333210 - 44333138
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    |||||||||||| |||||||| |||||||| |||| | || || ||| |||||||| ||||||||||||||||    
T  44333210 ttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagtgactatttgct 44333138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30925060 - 30925130
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttg 71  Q
    ||||||||||||||||||||  |||||||| |||    ||||| ||||||||||| |||||||||||||||    
T  30925060 ttgtatttaatcctgagtcaaggacctatgtgactgggagctgcagaatcagggattaaagtgactatttg 30925130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 12223754 - 12223835
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaata 85  Q
    |||||||||||||||||| |||||||| ||||   |  || ||  ||||||||||||||||| |||| ||||||||||||||    
T  12223754 tatttaatcctgagtcagggacctatgtgacattgatgtgcagtgtcagggactaaagtgaccattttctcaaacaaaaata 12223835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34704980 - 34704911
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    ||||||||||||||||||||||| ||| || |||||| || || ||| || | |||||||||||||||||    
T  34704980 ttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtgactattt 34704911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 35727767 - 35727694
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    |||||||||||||||||| |||||||| |||| | || || ||| |||||||  ||||||||| ||||||||||    
T  35727767 tatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgactgtttgctcaaa 35727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35729138 - 35729211
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||| ||||||| |||||  |||||||| |||| | ||||| | ||||||||| ||||||||||||||||||    
T  35729138 ttgtatgtaatcctaagtcaaggacctatgtgacagcgagctgcaaaatcagggaataaagtgactatttgctc 35729211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48646120 - 48646051
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    ||||||||||||||||||||| |||||||| |||| | || || | | |||||||| |||||||||||||    
T  48646120 ttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtgactattt 48646051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8374985 - 8374926
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaa 60  Q
    ||||||||||| |||||||||||||||||| |||| | || || ||| ||||||||||||    
T  8374985 ttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 8374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 46286574 - 46286504
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttg 71  Q
    ||||||||||||||||||||| ||||| |   ||| | || || ||| |||||||||||||||||||||||    
T  46286574 ttgtatttaatcctgagtcagggacctttctaacagcgagatgaagagtcagggactaaagtgactatttg 46286504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7259736 - 7259805
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    |||||||||||||||| ||||||||| ||| |||| | ||||  | |||||| || ||||||||||||||    
T  7259736 ttgtatttaatcctgaatcagagacccatgtgacagcgagctacaaaatcagcgattaaagtgactattt 7259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 19433989 - 19434058
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    ||||||||||| | |||||||||| || |||||| || || ||| | ||||||||||||||| |||||||    
T  19433989 tatttaatcctaaatcagagacctttgtgacaacgagatggagagttagggactaaagtgacaatttgct 19434058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32665822 - 32665895
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| ||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||    
T  32665822 ttgtatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagtgactatttgctc 32665895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9339717 - 9339641
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||| ||||||||||||||||| |||||||||||||||    
T  9339717 ttgtatttaatcctgagtcagggacctatgtaacaacgagctgcagaatcagggactaaagggactatttgctcaaa 9339641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 52439549 - 52439477
Alignment:
Q  2 tgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||| |||||||||||| |||| | ||||| |||||||||| |||||||||||||||||||    
T  52439549 tgtatttaatcctgagccagagacctatgtgacagcgagctgcagaatcaggggctaaagtgactatttgctc 52439477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10333238 - 10333314
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    |||||||||||| |||||||||||||||||  ||| | ||||| |||||||| || || ||||||||||||||||||    
T  10333238 ttgtatttaatcttgagtcagagacctatgtaacagcgagctgcagaatcagagattatagtgactatttgctcaaa 10333314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5782485 - 5782412
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| ||||||||||||||||| |||| | || || ||| |||||||||||| |||| ||||||||    
T  5782485 ttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaaatgacaatttgctc 5782412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 10333054 - 10332984
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||| |||  |||||||| |||||| || || | | ||||||||||||||||||||||||||    
T  10333054 tatttaatcctgaatcaaggacctatgtgacaacgaggtgcaaagtcagggactaaagtgactatttgctc 10332984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7945606 - 7945681
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    |||||||||||||||||||||  ||||||| |||| | || || ||| |||||||| ||| ||| |||||||||||    
T  7945606 ttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcagggaccaaaatgattatttgctcaa 7945681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3117720 - 3117647
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| |||||||||||||| || || ||| |  || ||| | |||||||||| |||||||||||||    
T  3117720 ttgtatttaatcttgagtcagagacctttgtgataacgatgtgaagagttagggactaaaatgactatttgctc 3117647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42278120 - 42278047
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||| ||||||| |||||||| |||| ||||||| ||||||| ||||||||||||||||||||||    
T  42278120 ttgtatttaatcccgagtcagggacctatgtgacagcaagctgcagaatcaaggactaaagtgactatttgctc 42278047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 53771101 - 53771176
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    ||||||||||| ||||||||| |||||||| |||||| || || ||| ||||||||||||||||| ||||||||||    
T  53771101 ttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaagtgaccatttgctcaa 53771176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47874635 - 47874553
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaacaaaaa 83  Q
    |||||||||||| |||||||| |||||||| || | | ||||| |||||||| ||||||||||||||||| |||||| |||||    
T  47874635 ttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaagtgactatttactcaaagaaaaa 47874553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31844793 - 31844720
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| |||| | || || |||   ||||||||||||||||||||||||    
T  31844793 ttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagctagggactaaagtgactatttgctc 31844720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19051283 - 19051358
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    ||||||||||||  ||||||| ||||| || | |||| || |||||| ||||||||||||||||| ||||||||||    
T  19051283 ttgtatttaatctcgagtcagtgacctttgtgccaacgaggtgtagagtcagggactaaagtgaccatttgctcaa 19051358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31845007 - 31845082
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    |||||||||||||||||||||| ||||||  ||||||||| || | |||||   |||||||||| |||||||||||    
T  31845007 ttgtatttaatcctgagtcagaaacctatatgacaacaagatgcaaaatcaaaaactaaagtgagtatttgctcaa 31845082  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4703269 - 4703345
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaaa 77  Q
    ||||||||||| |||||| || |||||||| |||| | || |||||| ||||  ||||||||||| |||||||||||    
T  4703269 ttgtatttaattctgagttagggacctatgtgacagcgagatgtagagtcagtaactaaagtgacaatttgctcaaa 4703345  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 54574496 - 54574462
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgaca 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  54574496 ttgtatttaatcctgagtcagagacctatgtgaca 54574462  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47878536 - 47878608
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    ||||||||||||| ||||||| ||||||||  ||| | || || ||| |||||||  ||||||||||||||||    
T  47878536 ttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcagggatcaaagtgactatttgct 47878608  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 41754066 - 41753996
Alignment:
Q  4 tatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||||| |||||||| |||| |||| || |||| |||||||||||||||||||||||||    
T  41754066 tatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtgactatttgctc 41753996  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35177466 - 35177391
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    ||||||||||||| ||||||| |||||||| |||| | ||||| ||||| |||||||||| |||||||||||||||    
T  35177466 ttgtatttaatccggagtcagggacctatgtgacagcgagctgcagaattagggactaaattgactatttgctcaa 35177391  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32898497 - 32898571
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||| |||||| |||||||| ||||   || || ||| |||||||||||||||||||||||||||    
T  32898497 ttgtatttaatcctaagtcagggacctatgtgacagtgagttgcagagtcagggactaaagtgactatttgctca 32898571  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1953022 - 1953090
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    |||||| ||||||| ||||||||| ||||  |||||| ||||| ||||||||||||||||||||||||||    
T  1953022 ttgtatgtaatcct-agtcagagatctatatgacaacgagctgcagaatcagggactaaagtgactattt 1953090  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41754847 - 41754919
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||||||||||| ||||| |||| | || || ||||||| ||| ||||||||||||||||||    
T  41754847 ttgtatttaatcctgagtcagagatctatgtgacagcgaggtgcagaatca-ggattaaagtgactatttgctc 41754919  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10407636 - 10407708
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    |||| ||||||||| |||||  |||||||| ||||   ||||| |||||||| ||||||||||||||||||||    
T  10407636 ttgtgtttaatcctaagtcaatgacctatgtgacagtgagctgcagaatcagagactaaagtgactatttgct 10407708  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5965494 - 5965563
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactattt 70  Q
    ||||||||||||||||||||| ||| | || |||||| || |||| |||||| |||| || |||||||||    
T  5965494 ttgtatttaatcctgagtcagggacatttgtgacaacgaggtgtaaaatcagagactgaaatgactattt 5965563  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35178856 - 35178929
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||| ||  |||| | |  || ||| |||||||| |||||||||||||||||    
T  35178856 ttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtcagggaccaaagtgactatttgctc 35178929  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 10405647 - 10405619
Alignment:
Q  7 ttaatcctgagtcagagacctatgcgaca 35  Q
    |||||||||||||||||||||||||||||    
T  10405647 ttaatcctgagtcagagacctatgcgaca 10405619  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30748070 - 30747996
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||| |||||| |||||||| |||| | || || |||||||||||||||||||||||||||||||    
T  30748070 ttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaagtgactatttgctca 30747996  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21069360 - 21069286
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    ||||||||||||||||||||||||||| || |||||| || || ||| |||| ||||||||||||||||||||||    
T  21069360 ttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtcagagactaaagtgactatttgctca 21069286  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8074522 - 8074449
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| ||| |||| |||| | ||||| | ||||||||||||||||||||||||||||    
T  8074522 ttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagtgactatttgctc 8074449  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 546089 - 546161
Alignment:
Q  2 tgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||||| |||||||| |||| | ||||| | |||| ||||||||||||||||||||||||    
T  546089 tgtatttaatcctgagtcagggacctatgtgacagcgagctgcaaaatc-gggactaaagtgactatttgctca 546161  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9538101 - 9538174
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||  |||||| || || ||| |||||||| |||||||||||||||||    
T  9538101 ttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggaccaaagtgactatttgctc 9538174  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 40612712 - 40612784
Alignment:
Q  2 tgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||||||||||| |||||| | ||||   ||||| | ||||||||||||||||||||||||||||    
T  40612712 tgtatttaatcctgagtcagggacctacgtgacagtgagctgcaaaatcagggactaaagtgactatttgctc 40612784  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16611799 - 16611725
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||||||||||||||| |||| | || |||||| ||| | | ||||||||| |||||||||    
T  16611799 ttgtatttaatcctgagtcagagacctatgtgacagcgaggtgtagagtcaagaattaaagtgaccatttgctca 16611725  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2464740 - 2464667
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| |||||||  |||||||  |||| | ||||| |||||||| |||||||||||||||||||||    
T  2464740 ttgtatttaatcatgagtcatggacctatatgacagcgagctgcagaatcagtgactaaagtgactatttgctc 2464667  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4592932 - 4592859
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    |||||||||||| |||||||| ||| |||| |||| | ||||  | ||||||||||||||||||||||||||||    
T  4592932 ttgtatttaatcttgagtcagggacttatgtgacagcgagctacataatcagggactaaagtgactatttgctc 4592859  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28591166 - 28591239
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctc 74  Q
    ||||||||||||||||||||| |||||||| |||| | || || ||| |||||||  |||||||||||||||||    
T  28591166 ttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgactatttgctc 28591239  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 14891199 - 14891270
Alignment:
Q  5 atttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctcaa 76  Q
    |||||||| ||||||||||||||||| |||| | || || ||| | |||||| |||||||||||||||||||    
T  14891199 atttaatcatgagtcagagacctatgtgacagcgaggtgcagagtgagggaccaaagtgactatttgctcaa 14891270  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 13651173 - 13651245
Alignment:
Q  2 tgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgctca 75  Q
    |||||||||||||||||||| |||||||| |||| | || || | | ||| |||||||||||||||||||||||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacagc-aggtgcacagtcaaggactaaagtgactatttgctca 13651245  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19183021 - 19182987
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgaca 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  19183021 ttgtatttaatcctgagtcagagacctatgtgaca 19182987  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 544719 - 544691
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctat 29  Q
    |||||||||||||||||||||||||||||    
T  544719 ttgtatttaatcctgagtcagagacctat 544691  T

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Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 116126 - 116054
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctatgcgacaacaagctgtagaatcagggactaaagtgactatttgct 73  Q
    ||||||||||||||||||||| |||||||| |||| | ||||| ||||| ||| |||||||||||||||||||    
T  116126 ttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaactaaagtgactatttgct 116054  T

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