View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7195_low_4 (Length: 247)
Name: NF7195_low_4
Description: NF7195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7195_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 32942333 - 32942563
Alignment:
| Q |
18 |
aataaactcatcctata--gtagtcaagacgttaacaattatgacaaaagtaataataaatttattttgtatagatattgtagtggcaatatatataaac |
115 |
Q |
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| T |
32942333 |
aataaactcatcctatatagtagtcaagacgtgaacaattatcacaaaagtaataataaacttattt-gtatagatattatagtggctatatatataaac |
32942431 |
T |
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| Q |
116 |
atgaaacgtccagaaaaatcatctatagatactttaagaaaattgagtaagaaagaacaacaatagataaaaatggagtgacatcacgtaattgaggaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32942432 |
atgaaacgtccagaaaaatcatctatagatactttaagaaaattgaataagaaagaacaacaatagataaaaatggagtgacatcacgtacttgaggaat |
32942531 |
T |
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| Q |
216 |
tttgttgagttaattaatttcaaactactttt |
247 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
32942532 |
tttgtagagttaattaatttcaaactactttt |
32942563 |
T |
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