View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7197_high_1 (Length: 232)
Name: NF7197_high_1
Description: NF7197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7197_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2976081 - 2975850
Alignment:
| Q |
1 |
gcacaaaaatcaaaatataaacttcagatatattcttgggtttaatgtcatcaaaatcatcccatacattcaaatcttccgcaagcatagaactttctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2976081 |
gcacaaaaatcaaaatataaacttcagatatattcttgggtttaatgtcatcaaaatcatcccatacattcaaatcttccgcaagcatagaactttctca |
2975982 |
T |
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| Q |
101 |
atagtcagtcaatataccatacaaaaacttgatagaacaatccatttaattaacagaagaaattaatcaaattgcacatcttaattccctcctagctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2975981 |
atagtcagtcaatataccatacaaaaacttgatagaacaatccatttaattaacagaagaaattaatcaaattgcacatcttgattccctcctagctcta |
2975882 |
T |
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| Q |
201 |
acaaatctctaatcctaaagaatcatataaaa |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2975881 |
acaaatctctaatcctaaagaatcatataaaa |
2975850 |
T |
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