View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7197_high_2 (Length: 437)
Name: NF7197_high_2
Description: NF7197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7197_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 17736943 - 17737351
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736943 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17737042 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17737043 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaattatgtcctattccatat |
17737142 |
T |
|
| Q |
214 |
tcgtatactatctaaaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactgtcatattagaaaatttactttatagat |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17737143 |
tcgtatactatctgaaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactgtcatattagaaaatttactttatagat |
17737242 |
T |
|
| Q |
314 |
gaaaaagttatttattttgaaaattcactagctagtaacatttgttgtaatgtagatgatgtgaaacaaatcacccttctgaaatatgattttacgagtg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17737243 |
gaaaaagttatttattttgaaaattcactaactagtaacagttgttgtaatgtagatgatgtgaaacaaatcacccttctgaaatatgattttacgagtg |
17737342 |
T |
|
| Q |
414 |
attgtttat |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
17737343 |
attgtttat |
17737351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 17708706 - 17709041
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17708706 |
tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17708805 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatat |
213 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| |
|
|
| T |
17708806 |
ggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaataaccaa----------------cctatttcttat |
17708889 |
T |
|
| Q |
214 |
tcgtatactatctaaaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactg-tcatattagaaaatttac-----ttt |
307 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
17708890 |
tcttatactatctgaaatatagtttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaattt |
17708989 |
T |
|
| Q |
308 |
atagatgaaaaagttatttattttgaaaattcactagctagtaacatttgtt |
359 |
Q |
| |
|
|| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17708990 |
attgatgaaaaaattatttattctgaaaattcactagctagtaacatttgtt |
17709041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 16730588 - 16730907
Alignment:
| Q |
30 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16730588 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt |
16730687 |
T |
|
| Q |
130 |
ccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatattcgtatactatctaaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||| |||||||||| || |
|
|
| T |
16730688 |
ccatagtatcttaaatatgttttctaagcaacccatttttatattttaataaccaa----------------cctatttcttattcttatactatctgaa |
16730771 |
T |
|
| Q |
230 |
atatattttgtttgacaatttttctattagttcattatctgcatagttttataactg-tcatattagaaaatttac-----tttatagatgaaaaagtta |
323 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
16730772 |
atatagtttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaatttattgatgaaaaaatta |
16730871 |
T |
|
| Q |
324 |
tttattttgaaaattcactagctagtaacatttgtt |
359 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16730872 |
tttattctgaaaattcactagctagtaacatttgtt |
16730907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 17736360 - 17736522
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736360 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17736459 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt |
176 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
17736460 |
ggttgattgttgaattccatagtatctcaaatatgttttctaaataacccattttcatatttt |
17736522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 17718530 - 17718682
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17718530 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17718629 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatt |
166 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17718630 |
ggttgattcttgaattccatagcatcttaaatatgttttctaagcaacccatt |
17718682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 17699597 - 17699759
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17699597 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17699696 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt |
176 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
17699697 |
ggttaattgttgaattccatagtatctcaaatatgttttctaaataatccatttttatatttt |
17699759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 16722583 - 16722745
Alignment:
| Q |
14 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16722583 |
tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
16722682 |
T |
|
| Q |
114 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt |
176 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
16722683 |
ggttaattgttgaattccatagtatctcaaatatgttttctaaataaaccattttaatatttt |
16722745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 17718685 - 17718844
Alignment:
| Q |
200 |
gtcctattccatattcgtatactatctaaaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactg-tcatattagaaa |
298 |
Q |
| |
|
|||||||| | ||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
17718685 |
gtcctatttcttattcttatactatctgaaatatattttgtttgacattttttatattagttcattatctgcatagttttataactgttcaca-tagaaa |
17718783 |
T |
|
| Q |
299 |
atttactttatagatgaaaaagttatttattttgaaaattcact-agctagtaacatttgtt |
359 |
Q |
| |
|
|||||||| || |||| |||||||||||||| |||||||||| | ||||| ||||||||||| |
|
|
| T |
17718784 |
atttacttaattgatg-aaaagttatttattctgaaaattcattaagctattaacatttgtt |
17718844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 228 - 353
Target Start/End: Original strand, 17736577 - 17736702
Alignment:
| Q |
228 |
aaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactgt-catattagaaaatttactttatagatgaaaaagttattt |
326 |
Q |
| |
|
||||| ||||||||| |||||||| |||| ||| ||||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
17736577 |
aaatacattttgtttcgcaatttttatattggttaattatctgcatagttttataactgttcatatttgaaa-tttactttattgatgaaaaagttattt |
17736675 |
T |
|
| Q |
327 |
attttgaaaattcactagctagtaaca |
353 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
17736676 |
atcgtgaaaattcactagctagtaaca |
17736702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 353
Target Start/End: Original strand, 16722800 - 16722925
Alignment:
| Q |
228 |
aaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactgt-catattagaaaatttactttatagatgaaaaagttattt |
326 |
Q |
| |
|
||||| ||||||||| |||||||| |||| || ||||||||||||||||||||||| | |||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
16722800 |
aaatacattttgtttcgcaatttttatattggtctattatctgcatagttttataactattcatatttgaaa-tttactttattgatgaaaaagttattt |
16722898 |
T |
|
| Q |
327 |
attttgaaaattcactagctagtaaca |
353 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
16722899 |
atcatgaaaattcactagctagtaaca |
16722925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 353
Target Start/End: Original strand, 17699814 - 17699939
Alignment:
| Q |
228 |
aaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactgt-catattagaaaatttactttatagatgaaaaagttattt |
326 |
Q |
| |
|
||||| ||||||||| |||||||| |||| || ||||||||||||||||||||||| | |||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
17699814 |
aaatacattttgtttcgcaatttttatattggtctattatctgcatagttttataactattcatatttgaaa-tttactttattgatgaaaaagttattt |
17699912 |
T |
|
| Q |
327 |
attttgaaaattcactagctagtaaca |
353 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
17699913 |
atcatgaaaattcactagctagtaaca |
17699939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 17714184 - 17714310
Alignment:
| Q |
131 |
catagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatattcgtatactatctaaaa |
230 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||| |||||||| | ||| ||| || | ||| |||| ||||| |||||||||| ||| |
|
|
| T |
17714184 |
catagtatctcaaatatgtcttataagcaacccatttttatgttttaatacacaaacagggcaagtagcgtcatattttgtattcttatactatctcaaa |
17714283 |
T |
|
| Q |
231 |
tatattttgtttgacaatttttctatt |
257 |
Q |
| |
|
| |||||||||| ||| ||||| |||| |
|
|
| T |
17714284 |
tttattttgtttaacattttttatatt |
17714310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 46480224 - 46480325
Alignment:
| Q |
21 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat |
120 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||| |||||||| || | ||||| || ||||||||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
46480224 |
gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat |
46480323 |
T |
|
| Q |
121 |
tt |
122 |
Q |
| |
|
|| |
|
|
| T |
46480324 |
tt |
46480325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 5160717 - 5160801
Alignment:
| Q |
30 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| | | ||||||||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
5160717 |
gctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg |
5160801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 46491137 - 46491239
Alignment:
| Q |
21 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat |
120 |
Q |
| |
|
|||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| || ||||||||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
46491137 |
gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat |
46491236 |
T |
|
| Q |
121 |
ttt |
123 |
Q |
| |
|
||| |
|
|
| T |
46491237 |
ttt |
46491239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 51944321 - 51944403
Alignment:
| Q |
21 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaa |
103 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||| || | |||||| || ||||||||||| ||||| |||| |
|
|
| T |
51944321 |
gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa |
51944403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
| Q |
21 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg |
114 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| || |||||| | | | ||||||||| |||||||||||| | ||| ||||||| ||||||| |
|
|
| T |
5156676 |
gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg |
5156769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
| Q |
22 |
actttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg |
111 |
Q |
| |
|
||||||| ||||||||||| || |||||| | ||||||||||| || | ||||| || |||||||||| ||||| |||||||||||| |
|
|
| T |
46498380 |
actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg |
46498469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 46544915 - 46545004
Alignment:
| Q |
21 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctctt |
110 |
Q |
| |
|
|||||||| |||||||||||||| || ||| ||||||||||||| || |||||| |||||||| ||||| | || ||||||||||| |
|
|
| T |
46544915 |
gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt |
46545004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University