View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7197_low_1 (Length: 902)
Name: NF7197_low_1
Description: NF7197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7197_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 659 - 895
Target Start/End: Complemental strand, 4007003 - 4006765
Alignment:
| Q |
659 |
gttgaagtcaaaggggttaggttcagctcttgctttcttctgaccttcagctgttccggtcctgctctgatgttctagttctgctgcagtgttgtggcat |
758 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4007003 |
gttgaagtcaaaagggttaggttcagctgttgctttcttctgaccttcagctgttccagtcctgctctgatgttctagttctgctgcagtgttgtggcat |
4006904 |
T |
|
| Q |
759 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtat--ttttatcatttgtagttgtcttggctgcttggcgt |
856 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4006903 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtatttttttatcatttgtagttgtcttggctgcttggcgt |
4006804 |
T |
|
| Q |
857 |
tcaagccctttggggcgttggtattattttgttgatgtc |
895 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4006803 |
tcaagccctttggggcgttggtattattttgttgatgtc |
4006765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 232 - 412
Target Start/End: Original strand, 10219919 - 10220099
Alignment:
| Q |
232 |
gatttcagatcggcatggaagatgttttaggatttttctgcgtaatttcttatgtgtagatatgcttctcccggtaaaggcatggggcctagaaattgaa |
331 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| | |||||||||| | | ||||||| |||| ||| ||||| || |||||||||||| |
|
|
| T |
10219919 |
gatttcagatcaacagagaagatgttttaggatttttctgcattatttcttatgcgcaattatgcttttccccgtataggcagggatcctagaaattgag |
10220018 |
T |
|
| Q |
332 |
gattcagtttaatatgaaaagaaaatcctaatattttgctag-ttttttgatagttaaactttaaagccatggaattattca |
412 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||||||| |||||| || ||| ||| |||||||||| ||||||||| |
|
|
| T |
10220019 |
gattcagtttaatatg-aaagaaaatcataatatcttgctagtttttttcttaattatactctaaagccatgaaattattca |
10220099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 412 - 568
Target Start/End: Original strand, 4571640 - 4571788
Alignment:
| Q |
412 |
actctagttccttttgcatgccttgtaatgttaaccctgatgaataaagtgtatttagttatgttttgatagttactacttacttgccatcattcttggt |
511 |
Q |
| |
|
|||||||||| ||||| ||||||||| | ||||| ||||| |||||||||| ||| ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
4571640 |
actctagttctttttgtatgccttgttacattaacgctgataaataaagtgtgttttgttatgtttcaattgttact-------tgccatcattcttggt |
4571732 |
T |
|
| Q |
512 |
tcttcatttggtacatctttgattcttacatagtttggacaaactgagcctggagat |
568 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
4571733 |
tcttc-tttgatacatctttgattcttacataggtttgacaaactgatcctggagat |
4571788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 321 - 412
Target Start/End: Original strand, 4571524 - 4571615
Alignment:
| Q |
321 |
tagaaattgaagattcagtttaatatgaaaagaaaatcctaatattttgctagttttttgatagttaaactttaaagccatggaattattca |
412 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || | |||||||| | || ||||||||| |
|
|
| T |
4571524 |
tagaaattgaggattcagtttaatatgaaaagaaaattgtaatattttgctagttttttattactttagctttaaagtcgtgtaattattca |
4571615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 10219755 - 10219797
Alignment:
| Q |
98 |
ttaccaacaacatcttatgagaggacacaactagactgtgata |
140 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
10219755 |
ttaccaacaacatcgcatgagaggacacaactagactatgata |
10219797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 29946244 - 29946301
Alignment:
| Q |
27 |
gttaagaaagtgggaagtggacttagtagagggtttttggtagtgaaccgcaatttga |
84 |
Q |
| |
|
|||||||||||| ||| ||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
29946244 |
gttaagaaagtgagaaatggacttaggatagggtttatggtagtgaaccgcaatttga |
29946301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University