View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7197_low_3 (Length: 415)
Name: NF7197_low_3
Description: NF7197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7197_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 6838660 - 6838277
Alignment:
| Q |
19 |
aagttccagtcaaataaacgatacactattattgttaagggaaactaatttagtctggcaatataaatctttttagtcaaataaacgataattgatatgt |
118 |
Q |
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| T |
6838660 |
aagttccagtcaaataaacgatacactattattgttaagggaaactaatttagtctggcaatataaatctttttagtcaaataaacgataattgatatgt |
6838561 |
T |
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| Q |
119 |
agtaaaaagacactccttgcaagttggatttggaagttattgcagctaatctccttagagagatgtgaatataaatctttttataaatgctctttgagcc |
218 |
Q |
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| T |
6838560 |
agtaaaaagacactccttgcaagttggatttggaagttattgcagctaatctctttagagagatgtgaatataaatctttttataaatgctctttgagcc |
6838461 |
T |
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| Q |
219 |
ctctgatcatccttactttggagtgagacgctagtaggactcgtagatggcgtagtctcgtgatagaattagagcagacgaccagattaaaatcttgggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6838460 |
ctctgatcatccttactttggagtgagacgctagtaggactcgtagagggcgtagtctcgtgatagaattagagcagacgaccagattaaaatcttggag |
6838361 |
T |
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| Q |
319 |
agatgttagtatgaaggtcttacgtgaaagacgggatcgataccaatttggatcttctccttccaagctccaatcaatctcttc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
6838360 |
agatgttagtatgaaggtcttacgtgaaagacgggatcgataccaatttggatcctctccttccaagttccaatcaatctcttc |
6838277 |
T |
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