View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_high_2 (Length: 392)
Name: NF7198_high_2
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 36 - 376
Target Start/End: Original strand, 8870821 - 8871161
Alignment:
| Q |
36 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatgtgtttggtaaaaaagtaaaag |
135 |
Q |
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| T |
8870821 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaaccttcttaaaatagccctatgacataaaatgtctttggtaaaaaaataaaag |
8870920 |
T |
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| Q |
136 |
tgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaatagtttat |
235 |
Q |
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| T |
8870921 |
tgtagagcaactaaccaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatataccgattttatgacatacaaatagtttat |
8871020 |
T |
|
| Q |
236 |
aattttataagtaaattaaaatatagcaatacattatttatctcgtgagagaaatttaatgcttaaagaagcataaaccaaagtgcgagggaaattattt |
335 |
Q |
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| T |
8871021 |
aattttataagtaaattaaaatatagcaatacattatttatctcgtgagagaaatttaatgcttaaagaagcataaaccaaagtgcgagggaaattattt |
8871120 |
T |
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| Q |
336 |
tatagttacacacatttacatttattgttcctgcactttgt |
376 |
Q |
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| T |
8871121 |
tatagttgcacacattgacatttattgttcctgcactttgt |
8871161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 36 - 376
Target Start/End: Original strand, 8865114 - 8865472
Alignment:
| Q |
36 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatg--tgtttggtaaaa----aag |
129 |
Q |
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| T |
8865114 |
actcaagaaaaaagaaccaaagattttcaacatctgcctcattaaaaaccttcttaaaatagcccaataacataaaatgcaagtttcgtaaaaaaataaa |
8865213 |
T |
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| Q |
130 |
taaaagtgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaata |
229 |
Q |
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| T |
8865214 |
taaaagtgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatataccgattttatgacatacaaata |
8865313 |
T |
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| Q |
230 |
gtttataattttataagtaaattaaaatatagcaatacattatttatctcgtgagagaaatttaatgcttaaagaagcataaaccaaagtgcgagggaaa |
329 |
Q |
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| T |
8865314 |
gtttataattttataagtaaattaaaatatagcaatacattatttatctcgtgagagaaatttaatgcttaaagaagcataaaccaaaatgcgagggaaa |
8865413 |
T |
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| Q |
330 |
ttatt------------ttatagttacacacatttacatttattgttcctgcactttgt |
376 |
Q |
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| T |
8865414 |
ttattaaagtaaagtggttatagttacacacattgacatttattgttcctgcactttgt |
8865472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 334
Target Start/End: Complemental strand, 8919341 - 8919160
Alignment:
| Q |
150 |
acaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaatagtttataattttataagtaa |
249 |
Q |
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| T |
8919341 |
acaacacaaagacaagataaaca---taaatcaaagtccaagaataattattaatgtatgaattttatgacatacaaatagttcatacttttataagtaa |
8919245 |
T |
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| Q |
250 |
attaaaatatagcaatacattatttatctcgtgagagaaatttaatgcttaaagaagcataaaccaaagtgcgagggaaattatt |
334 |
Q |
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| T |
8919244 |
attaaaatatagtaatacattattgatcttgtgaaagaaatttaaagcttaaagaagcataaaccaaagtgcgagggaaattatt |
8919160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 8919429 - 8919354
Alignment:
| Q |
36 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatg |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||| |
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| T |
8919429 |
actcaagaaaaaagaaccaaagactttcaacttctgcctcattaaaaa---ccttagaatagcccaatgtgataaaatg |
8919354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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