View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_low_10 (Length: 228)
Name: NF7198_low_10
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 43919816 - 43920043
Alignment:
| Q |
1 |
catccagcaggttcactagatgattttgaatctttcttatagttcactagtactgcaccgtaaactgcaaacaacagatttagtgtaccttaatgtgcac |
100 |
Q |
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| T |
43919816 |
catccagcaggttcactagatgattttgaatctttcttatagttcactagtactgcaccgtaaactgcaaacaacagatttagtgtatcttaatgtgcac |
43919915 |
T |
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| Q |
101 |
acacaaaatggaacttaaagaataagacctttcatgaattgtgctggcttttttccccgtttacataacagtaaaatgaaaagatgatgacatttacaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43919916 |
acacaaaatggaacttaaagaataagacctttcatgaattgtgctggcttttttccccgtttaataaacagtaaaatgaaaagatgatgacatttacaga |
43920015 |
T |
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| Q |
201 |
atggttggagtgaaagttttgctgctgt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43920016 |
atggttggagtgaaagttttgctgctgt |
43920043 |
T |
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