View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7198_low_3 (Length: 306)
Name: NF7198_low_3
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 2797715 - 2797433
Alignment:
| Q |
9 |
agcagagataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaa |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797715 |
agcagacataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaa |
2797616 |
T |
|
| Q |
109 |
tttccctatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797615 |
tttccctatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcag |
2797516 |
T |
|
| Q |
209 |
aatgaacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctctaaagggtggaataacagaatgaaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797515 |
aatgaacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctctaaagggtggaataacagaatgaaa |
2797433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 3145775 - 3145498
Alignment:
| Q |
16 |
ataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
3145775 |
ataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcagcatgcattgcccagattacaagaaaacctcaagctaacaatttccct |
3145676 |
T |
|
| Q |
116 |
atcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaac |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3145675 |
atcctcatcgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaatgaac |
3145576 |
T |
|
| Q |
216 |
aaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatgaaat |
292 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
3145575 |
aaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaat |
3145498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 2889087 - 2889364
Alignment:
| Q |
16 |
ataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2889087 |
ataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcacgatgtattgcccagattacaagaaaacctcaagctaacaatttccct |
2889186 |
T |
|
| Q |
116 |
atcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaac |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2889187 |
atcctcatcgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaatgaac |
2889286 |
T |
|
| Q |
216 |
aaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatgaaat |
292 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2889287 |
aaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaat |
2889364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 2848722 - 2848953
Alignment:
| Q |
37 |
cccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2848722 |
cccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt |
2848821 |
T |
|
| Q |
137 |
atcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatattacc |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2848822 |
atcatactttataaagttcagagcctgcattacggtttcagtttcagaaaagataccggatagaacccgcagaatgaacaaggtaattttgtatattact |
2848921 |
T |
|
| Q |
237 |
atcaaatgataaatatgaatgtagaggctcta |
268 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
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|
| T |
2848922 |
atcaaatgataaatatgagtgtagaggctcta |
2848953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 3160639 - 3160366
Alignment:
| Q |
19 |
ccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||| |||||||||||| |||| |
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|
| T |
3160639 |
ccttaaaatatttatttgcctgttcataatctttcaattttatcaagcacgatgcattgctcagattacaagaagacctcaacccaacaatttccttatc |
3160540 |
T |
|
| Q |
119 |
ctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaag |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
3160539 |
ctcatcgggaaaggaagtatcatactttataaacttcagagcctgtattacggtttcagtttcagaaaagatacctgatagaacctgcagaatgaacaag |
3160440 |
T |
|
| Q |
219 |
gtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatgaaa |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3160439 |
gtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaa |
3160366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 2874408 - 2874687
Alignment:
| Q |
11 |
cagagataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatt |
110 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
2874408 |
cagacataccttcaaatatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatt |
2874507 |
T |
|
| Q |
111 |
tccctatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaa |
210 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
2874508 |
tccttatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaa |
2874607 |
T |
|
| Q |
211 |
tgaacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatga |
289 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
2874608 |
tgaacaaggtaattttgtatattacgatcaaatgataaatatgagcgtagaggctatacaagggtggaataacagaatga |
2874687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 4417061 - 4416928
Alignment:
| Q |
157 |
gagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatattaccatcaaatgataaatatgaat |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| | || ||| |||| ||||||||||||||| | || ||| |||||| |||| |
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|
| T |
4417061 |
gagcctgtattacagtttcagtttcagaaaagatacatgatagaacacacaaaatcaacatggtaattttgtatatcaaca--aaacgataaagatgagc |
4416964 |
T |
|
| Q |
257 |
gtagaggctcta-aagggtggaataacagaatgaaa |
291 |
Q |
| |
|
| |||||||||| || | |||||||||| ||||||| |
|
|
| T |
4416963 |
gcagaggctctacaacgctggaataacaaaatgaaa |
4416928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 43313464 - 43313525
Alignment:
| Q |
173 |
ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta |
234 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
43313464 |
ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta |
43313525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 34743866 - 34743805
Alignment:
| Q |
173 |
ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta |
234 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||| |||||||||| ||||||||||||||| |
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|
| T |
34743866 |
ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta |
34743805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21531677 - 21531616
Alignment:
| Q |
173 |
ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta |
234 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
21531677 |
ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta |
21531616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 35167618 - 35167557
Alignment:
| Q |
173 |
ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta |
234 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
35167618 |
ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta |
35167557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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