View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_low_4 (Length: 305)
Name: NF7198_low_4
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 22080342 - 22080416
Alignment:
| Q |
173 |
caaactataaattctaaacatgggaagaacaaaaactcatcagaaacaaccaaacctgtacatggtaatttattt |
247 |
Q |
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| T |
22080342 |
caaactataaattctaaacatgtgaagaacaaaaactcctcagaaacaaccaaacctgtacatggtaatttattt |
22080416 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 22080078 - 22080160
Alignment:
| Q |
14 |
catcaagaaatgttagaactaaaagaacattgttggatatagtttaaaaaataaccatctaaaatacataatgtttttctgttg |
97 |
Q |
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|||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22080078 |
catcaaaaaatgttggaactaaaagaacat-gttggatatagtttaaaaaataaccatctaaaatacataatgtttttcagttg |
22080160 |
T |
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