View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_low_5 (Length: 249)
Name: NF7198_low_5
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 8866482 - 8866707
Alignment:
| Q |
7 |
taggaatcagaaatgtaaattggacaggcgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtttcgtttcttaaatgaagaacaat |
106 |
Q |
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| T |
8866482 |
taggaatcagaaatgtaaattggacaggtgatcatatcttgtgaccgttgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaat |
8866581 |
T |
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| Q |
107 |
tgaagaaagacgattttgttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgg |
206 |
Q |
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| T |
8866582 |
tgaagaaagatgattttgttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgg |
8866681 |
T |
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| Q |
207 |
gtccgaaattgaaagttggtttgatt |
232 |
Q |
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| T |
8866682 |
gtccgaaattgaaagttggtttgatt |
8866707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 8862622 - 8862819
Alignment:
| Q |
16 |
gaaatgtaaattggacaggcgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtttcgtttcttaaatgaagaacaattgaagaaag |
115 |
Q |
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| T |
8862622 |
gaaacgtaaactggacaggtgatcatatcttgcgactcttgggatgtttgatcatggtttctcaagtgttgtttcctaactgaagagcaattgaagaaag |
8862721 |
T |
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| Q |
116 |
acgatttt---gttattgattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtcc |
210 |
Q |
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| T |
8862722 |
acaattttgtcgttcctggttgtggaaaaaatcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtcc |
8862819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 9126211 - 9126303
Alignment:
| Q |
21 |
gtaaattggacaggcgatcatatcttgtgaccattgagatgattgatcttcgtttctcaggtttcgtttcttaaatgaagaacaattgaagaa |
113 |
Q |
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| T |
9126211 |
gtaaattggacatgtgatcatatcttgtgacccttggaataattgatcgtagtttctcaggtgtcgtttcctaaccgaagagcagttgaagaa |
9126303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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