View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_low_7 (Length: 240)
Name: NF7198_low_7
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5928670 - 5928893
Alignment:
| Q |
1 |
ttgtgcgttgattgtgaaaatgttactacatatgattgatgaatatatacataaacaagcatgttgttgagattcatatgtgttggattggtatgtaggt |
100 |
Q |
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| T |
5928670 |
ttgtgcgttgattgtgaaaatgttactacatatgattgatgaatatatacataaacaagcatgttcttgagattcatatgtgttagattggtatgtagat |
5928769 |
T |
|
| Q |
101 |
tgttgcgttagcatatatggcaaatcatatgctcatgcattcaatatgatcatgagatattacactttattgttagttcttgagagactacatccttcag |
200 |
Q |
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| T |
5928770 |
tgttgcgttagcatatatggcaaatcatatgctcatgcattcaatatgatcatgagatattacactttattgttagttcttgagagactacaccctccgg |
5928869 |
T |
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| Q |
201 |
ttggttcgtgagagactacacttg |
224 |
Q |
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| T |
5928870 |
ttggttcgtgagagactacacttg |
5928893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 3385053 - 3385012
Alignment:
| Q |
7 |
gttgattgtgaaaatgttactacatatgattgatgaatatat |
48 |
Q |
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| T |
3385053 |
gttgattgtgaaaatgttgttacatgtgattgatgaatatat |
3385012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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