View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7198_low_8 (Length: 239)
Name: NF7198_low_8
Description: NF7198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7198_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38885800 - 38886019
Alignment:
| Q |
1 |
gcaaaaccatgcaactcaaacccatcataaccagcataaggacaaggtggaatccactgccatctcttccttccaatatcataaaccaaacccttatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38885800 |
gcaaaaccatgcaactcaaacccatcataaccagcataaggacaaggtggaatccactgccatctcttccttccaatatcataaaccaaacccttatcac |
38885899 |
T |
|
| Q |
101 |
ttcctttaatcataatcacaataaactcaccattcccgacacactcaaatccattcccattttccatttcagcaaactgaacataaagttgttgtggcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38885900 |
ttcctttaatcataatcacaataaactcaccattcccaacacactcaaatccattcccattttccatttcagcaaactgaacataaagttgttgtggcat |
38885999 |
T |
|
| Q |
201 |
tctctcactttcaacccaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
38886000 |
tctctcactttcaacccaaa |
38886019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2980109 - 2980137
Alignment:
| Q |
1 |
gcaaaaccatgcaactcaaacccatcata |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2980109 |
gcaaaaccatgcaactcaaacccatcata |
2980137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2996469 - 2996437
Alignment:
| Q |
1 |
gcaaaaccatgcaactcaaacccatcataacca |
33 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
2996469 |
gcaagaccatgcaactcaaacccatcataacca |
2996437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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