View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7201_high_9 (Length: 224)

Name: NF7201_high_9
Description: NF7201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7201_high_9
NF7201_high_9
[»] scaffold0308 (1 HSPs)
scaffold0308 (1-224)||(16148-16370)
[»] chr5 (21 HSPs)
chr5 (1-222)||(35123138-35123359)
chr5 (60-224)||(22540953-22541118)
chr5 (1-214)||(30510477-30510692)
chr5 (1-214)||(30550817-30551032)
chr5 (16-104)||(4399482-4399570)
chr5 (16-101)||(8571538-8571623)
chr5 (16-104)||(19513912-19514000)
chr5 (11-80)||(6866084-6866153)
chr5 (46-104)||(3199604-3199662)
chr5 (10-96)||(29736078-29736164)
chr5 (10-98)||(29094947-29095035)
chr5 (10-85)||(3168966-3169041)
chr5 (17-96)||(19182281-19182360)
chr5 (10-95)||(38357081-38357166)
chr5 (10-95)||(13836736-13836823)
chr5 (11-127)||(34311780-34311896)
chr5 (10-85)||(12904540-12904615)
chr5 (26-80)||(11817419-11817473)
chr5 (16-94)||(13916889-13916967)
chr5 (146-224)||(37220658-37220735)
chr5 (16-84)||(17737781-17737849)
[»] chr3 (14 HSPs)
chr3 (1-222)||(9163561-9163782)
chr3 (1-222)||(19824227-19824448)
chr3 (10-98)||(38926395-38926483)
chr3 (16-129)||(54440560-54440673)
chr3 (11-98)||(18369397-18369484)
chr3 (16-102)||(27497369-27497455)
chr3 (18-127)||(36708467-36708576)
chr3 (16-100)||(10867309-10867393)
chr3 (28-104)||(14868244-14868320)
chr3 (10-96)||(42675879-42675965)
chr3 (16-100)||(20198542-20198626)
chr3 (11-127)||(15484225-15484341)
chr3 (16-97)||(25873559-25873640)
chr3 (57-102)||(27968846-27968891)
[»] chr7 (23 HSPs)
chr7 (1-213)||(5021004-5021216)
chr7 (7-104)||(37724323-37724421)
chr7 (2-131)||(26078828-26078957)
chr7 (2-131)||(26102615-26102744)
chr7 (1-224)||(43571638-43571861)
chr7 (16-130)||(31025946-31026060)
chr7 (16-104)||(19728092-19728180)
chr7 (11-97)||(18670782-18670868)
chr7 (10-95)||(18767022-18767107)
chr7 (10-98)||(6909662-6909750)
chr7 (10-98)||(34344413-34344501)
chr7 (23-102)||(9975440-9975519)
chr7 (52-131)||(42430903-42430982)
chr7 (16-102)||(47106057-47106143)
chr7 (17-96)||(34458606-34458685)
chr7 (16-102)||(13554625-13554711)
chr7 (16-94)||(38780697-38780775)
chr7 (10-96)||(41801068-41801153)
chr7 (16-102)||(42565436-42565522)
chr7 (16-104)||(43021946-43022034)
chr7 (23-98)||(5326382-5326457)
chr7 (23-98)||(41339136-41339211)
chr7 (146-214)||(37724464-37724532)
[»] chr1 (13 HSPs)
chr1 (1-222)||(16873924-16874145)
chr1 (51-222)||(39730279-39730450)
chr1 (145-224)||(48321743-48321822)
chr1 (11-102)||(34854082-34854173)
chr1 (19-102)||(44929843-44929926)
chr1 (16-104)||(41503347-41503436)
chr1 (16-102)||(49265411-49265497)
chr1 (164-222)||(1954544-1954602)
chr1 (63-100)||(39730235-39730272)
chr1 (16-130)||(20795247-20795361)
chr1 (25-127)||(37139582-37139684)
chr1 (25-102)||(39429885-39429962)
chr1 (52-97)||(44415483-44415528)
[»] chr6 (14 HSPs)
chr6 (1-224)||(33804266-33804489)
chr6 (1-224)||(4474184-4474406)
chr6 (10-98)||(23066491-23066579)
chr6 (10-98)||(31297585-31297673)
chr6 (1-130)||(11468167-11468296)
chr6 (10-96)||(6004581-6004667)
chr6 (19-127)||(24749230-24749338)
chr6 (16-100)||(33572647-33572731)
chr6 (8-91)||(4406630-4406713)
chr6 (10-96)||(6008111-6008197)
chr6 (10-96)||(26010485-26010571)
chr6 (11-98)||(9051099-9051186)
chr6 (16-130)||(13085118-13085232)
chr6 (10-96)||(24378390-24378476)
[»] chr4 (13 HSPs)
chr4 (1-224)||(20668970-20669194)
chr4 (16-130)||(4525074-4525188)
chr4 (103-222)||(35122860-35122969)
chr4 (16-130)||(22540250-22540364)
chr4 (16-104)||(42953940-42954028)
chr4 (10-96)||(26693540-26693626)
chr4 (16-102)||(37615176-37615262)
chr4 (11-97)||(50451691-50451777)
chr4 (16-105)||(9993285-9993374)
chr4 (23-98)||(42169473-42169548)
chr4 (16-73)||(4641121-4641178)
chr4 (146-214)||(35957559-35957627)
chr4 (67-95)||(42249886-42249914)
[»] chr8 (12 HSPs)
chr8 (16-130)||(43254173-43254287)
chr8 (16-100)||(7555056-7555140)
chr8 (10-98)||(23941928-23942016)
chr8 (11-98)||(27083226-27083313)
chr8 (16-98)||(30261299-30261381)
chr8 (16-104)||(11394793-11394881)
chr8 (16-104)||(24793357-24793444)
chr8 (11-95)||(43613506-43613590)
chr8 (7-98)||(30501579-30501670)
chr8 (10-95)||(44083453-44083538)
chr8 (10-98)||(40467437-40467525)
chr8 (23-93)||(6900512-6900582)
[»] chr2 (15 HSPs)
chr2 (16-102)||(4040494-4040580)
chr2 (16-104)||(32244049-32244137)
chr2 (7-98)||(26490691-26490782)
chr2 (16-130)||(3119546-3119660)
chr2 (10-98)||(8066667-8066755)
chr2 (10-98)||(35487456-35487544)
chr2 (23-127)||(36803494-36803598)
chr2 (46-104)||(37139307-37139365)
chr2 (10-96)||(37643111-37643197)
chr2 (11-95)||(21614241-21614325)
chr2 (16-102)||(9669453-9669539)
chr2 (10-96)||(33912986-33913072)
chr2 (16-98)||(22052238-22052320)
chr2 (16-98)||(31594165-31594247)
chr2 (67-105)||(38443857-38443895)
[»] scaffold0707 (1 HSPs)
scaffold0707 (16-100)||(1061-1145)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-127)||(72145-72261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-95)||(41749-41822)
[»] scaffold0112 (1 HSPs)
scaffold0112 (16-98)||(16049-16131)


Alignment Details
Target: scaffold0308 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16370 - 16148
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16370 gtcccgaggttgttggataagattaaattgttatcattagggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 16271  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| || |    
T  16270 ctatgacatgtttaggaattggctaaccactgctagattctcttattttggactttgtaacactttgtatcttgtagtagttttctaggcacacc-tgtg 16172  T
Q  201 cttggaaaatgctaatgttgtgtt 224  Q
    ||||||||||||| ||||| ||||    
T  16171 cttggaaaatgcttatgttttgtt 16148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35123138 - 35123359
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  35123138 gtcccgaggttgttggataagattaaattgttatcattagggtggctgaaagctgaaaaagccatgtttgtttatggtacttagatgtggtggtcaagtc 35123237  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |    
T  35123238 ctataacatgtttaagaattggctaaccactgctagattatcttattttggactctgtaacactttgtatcttgtagtaatttcctaggcacgccttgtg 35123337  T
Q  201 cttggaaaatgctaatgttgtg 222  Q
    |||| ||| |||| ||||||||    
T  35123338 cttgaaaattgcttatgttgtg 35123359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 22541118 - 22540953
Alignment:
Q  60 agccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaattggctaaccactgctagattctc-ttattttggactctgt 158  Q
    |||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||| |||| |||| ||| ||||||||||| ||||||||||||||||    
T  22541118 agccatgtttgtttatggtacttatatgtgatggtcaagtcctatgacatgtttaggcattgactaatcaccgctagattctctttattttggactctgt 22541019  T
Q  159 aacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgctaatgttgtgtt 224  Q
    |||||||||||||||||| ||||||  ||||||||||||   |||| ||||||||| |||||||||    
T  22541018 aacactttgtatcttgtagtagttttttaggcacaccttatccttgaaaaatgctattgttgtgtt 22540953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30510477 - 30510692
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagc-taaaaaagccatgtttgtttatggtactcagatgtggtggtcaagt 99  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||||  ||||||  | ||||||||||||||||||| ||||||||||| |||    
T  30510477 gtcccaaggttattggataaggttaaattgttatcattacggtggctgaaagcaaaaaaaaaacgtgtttgtttatggtactcatatgtggtggtctagt 30510576  T
Q  100 cctataacatgtttaggaattggctaaccactgctagattctc-ttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttg 198  Q
    ||| |   ||||||||| ||||| |||   ||| |   |  || || | ||||||||||||||| |||||||||||||  ||  | ||||||||| ||||    
T  30510577 cctttgttatgtttaggcattggttaattcctgttttttgttctttgtgttggactctgtaacattttgtatcttgtagcagaattctaggcacatcttg 30510676  T
Q  199 agcttggaaaatgcta 214  Q
     |||||||| ||||||    
T  30510677 tgcttggaatatgcta 30510692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30550817 - 30551032
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagc-taaaaaagccatgtttgtttatggtactcagatgtggtggtcaagt 99  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||||  ||||||  | ||||||||||||||||||| ||||||||||| |||    
T  30550817 gtcccaaggttattggataaggttaaattgttatcattacggtggctgaaagcaaaaaaaaaacgtgtttgtttatggtactcatatgtggtggtctagt 30550916  T
Q  100 cctataacatgtttaggaattggctaaccactgctagattctc-ttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttg 198  Q
    ||| |   ||||||||| ||||| |||   ||| |   |  || || | ||||||||||||||| |||||||||||||  ||  | ||||||||| ||||    
T  30550917 cctttgttatgtttaggcattggttaattcctgttttttgttctttgtgttggactctgtaacattttgtatcttgtagcagaattctaggcacatcttg 30551016  T
Q  199 agcttggaaaatgcta 214  Q
     |||||||| ||||||    
T  30551017 tgcttggaatatgcta 30551032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4399570 - 4399482
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| | | |||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||||    
T  4399570 gataaaattaagttgttatctttagcgcggctgaaagctaaaaaagccacttttgtttttggaactcagatgtggtggtcaagtcctat 4399482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 8571623 - 8571538
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcc 101  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| |||||||||||||||||||||||    
T  8571623 gataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcc 8571538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 19513912 - 19514000
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| ||||| |||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||    
T  19513912 gataaaattaagttgttatctttagcgtggctgaaggctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctat 19514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 6866153 - 6866084
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtac 80  Q
    |||| |||||| | ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||    
T  6866153 tgttagataaggtcaaattgttatctttagggtggttgaaagctaaaaaggccatgtttgtttatggtac 6866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 3199604 - 3199662
Alignment:
Q  46 ctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    |||||||||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||    
T  3199604 ctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctat 3199662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 29736078 - 29736164
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||| ||||| || |||||||||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  29736078 ttgttagataaggttaaattattatctttggggtgactgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtca 29736164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 29094947 - 29095035
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| ||||||||  |||||| |||||| |   |||||||||||||||| |||| ||||||||||||    
T  29094947 ttgttagataaggtcaaattgttatctttagggtggttgaaagttaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaag 29095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 3168966 - 3169041
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcaga 85  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||    
T  3168966 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcaga 3169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 19182281 - 19182360
Alignment:
Q  17 ataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  19182281 ataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtca 19182360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 38357166 - 38357081
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    ||||| |||||| ||||||||||||| || |||||  |||||||||||||||   |||||| ||||||||| ||||  ||||||||    
T  38357166 ttgttagataaggttaaattgttatctttggggtggatgaaagctaaaaaagttgtgtttgcttatggtacgcagagatggtggtc 38357081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 13836736 - 13836823
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaa--gccatgtttgtttatggtactcagatgtggtggtc 95  Q
    ||||| |||||| | ||||||||||| ||  |||| ||||||||||||||   || ||||||||||||||||| |||| |||||||||    
T  13836736 ttgttagataaggtcaaattgttatctttgcggtggctgaaagctaaaaagaggcaatgtttgtttatggtacgcagaggtggtggtc 13836823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 34311896 - 34311780
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatg 110  Q
    |||| |||||| ||||||||||||| || ||||| ||||||| |||||  |   |||||||||||||||| ||||  ||||||||||  ||| || | ||    
T  34311896 tgttagataaggttaaattgttatctttggggtggctgaaagataaaactgttgtgtttgtttatggtacgcagagatggtggtcaaaccctttagcttg 34311797  T
Q  111 tttaggaattggctaac 127  Q
    ||||||  |||||||||    
T  34311796 tttaggctttggctaac 34311780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 12904615 - 12904540
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcaga 85  Q
    ||||| |||||| ||||||||||||| || ||||| |||||| ||||||| |   |||||||||||||||| ||||    
T  12904615 ttgttagataaggttaaattgttatctttggggtggctgaaaactaaaaatgttgtgtttgtttatggtacgcaga 12904540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 11817473 - 11817419
Alignment:
Q  26 aattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtac 80  Q
    |||||||||| || ||||| |||||||||||||| ||  ||||||||||||||||    
T  11817473 aattgttatctttggggtggctgaaagctaaaaaggctgtgtttgtttatggtac 11817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 13916967 - 13916889
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggt 94  Q
    ||||| ||||| |||||||  | || |||||||||||||||||| ||||  ||||||| ||| ||||| ||||||||||    
T  13916967 gataaaattaagttgttattgtcagcgtgactgaaagctaaaaatgccacttttgtttttggaactcatatgtggtggt 13916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 37220735 - 37220658
Alignment:
Q  146 ttttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgctaatgttgtgtt 224  Q
    ||||||||| ||||||| |||||||||||||  ||  | ||||||||| |||| |||||||| ||||| ||||||||||    
T  37220735 ttttggactttgtaacattttgtatcttgtagcagaattctaggcacatcttgtgcttggaatatgct-atgttgtgtt 37220658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 17737849 - 17737781
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcag 84  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| ||||||    
T  17737849 gataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactcag 17737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9163561 - 9163782
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9163561 gtcccgaggttgttggataagattaaattgttatctttagggtggctgaaagctaaaaaaaccatgtttgtttatggtactcagatgtggtggtcaagtc 9163660  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |    
T  9163661 ctttaacatgtttaggaattggctaactactgctagattctcttattttggactttgtaacactttgtatcttgtagtagtttcctaggcacaccttatg 9163760  T
Q  201 cttggaaaatgctaatgttgtg 222  Q
    |||||||| ||||  |||||||    
T  9163761 cttggaaattgcttttgttgtg 9163782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19824227 - 19824448
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19824227 gtcccgaggttgttggataagattaaattgatatcattagggtggctgaaagctaaaaaagccatgtttgtttatgatactcagatgtggtggtcaagtc 19824326  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| |    
T  19824327 ctataatatgtttaggaattggctaaccactgctagattctcttattttggactttgtaacactttgtatcttgtagtagtttcttaggcacactttgtg 19824426  T
Q  201 cttggaaaatgctaatgttgtg 222  Q
    |||||||| ||||  |||||||    
T  19824427 cttggaaattgcttttgttgtg 19824448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 38926483 - 38926395
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||||||| ||||||| |||||| || ||||||||||||||||| |||| ||||||||||||    
T  38926483 ttgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctatgtttgtttatggtacgcagaggtggtggtcaag 38926395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 54440560 - 54440673
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    |||||||| ||||||||||| |||| |||  |||||| |||||||||||| |||| || ||||||||| | |||||||||||||||| |  | ||||| |    
T  54440560 gataagatcaaattgttatcgttagtgtggatgaaaggtaaaaaagccatatttgattttggtactcataggtggtggtcaagtcctttggcttgtttgg 54440659  T
Q  116 gaattggctaacca 129  Q
    | ||||||||||||    
T  54440660 gcattggctaacca 54440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 18369397 - 18369484
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||| |||||| ||||||||||||| ||||| || |||||||||||||| ||  ||||||| |||||||| |||| ||||||||||||    
T  18369397 tgttagataaggttaaattgttatctttaggttggctgaaagctaaaaaggctgtgtttgtctatggtacgcagaggtggtggtcaag 18369484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 27497455 - 27497369
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| | ||||||||||||||||||||||    
T  27497455 gataaaattaagttgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttggaattcagatgtggtggtcaagtcct 27497369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 36708576 - 36708467
Alignment:
Q  18 taagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttagga 117  Q
    |||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  ||||||||||| ||| || | ||||| ||     
T  36708576 taaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtcaagccctttagcttgtttgggc 36708477  T
Q  118 attggctaac 127  Q
    ||||||||||    
T  36708476 attggctaac 36708467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 10867393 - 10867309
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||| |||||||| |||| ||| ||||||||||||||  |||  ||||||| ||| ||||||||||||||||||||||    
T  10867393 gataaaattaagttgttatcgttagcgtggctgaaagctaaaaataccacttttgtttttggaactcagatgtggtggtcaagtc 10867309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 14868244 - 14868320
Alignment:
Q  28 ttgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    |||||||| ||||  || |||||||||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||    
T  14868244 ttgttatctttagcttggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctat 14868320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 42675879 - 42675965
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  42675879 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 42675965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 20198542 - 20198626
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||| |||||||| |||| ||| ||||||||||||||   ||  ||||||| ||| ||||||||||||||||||||||    
T  20198542 gataaaattaagttgttatcgttagtgtggctgaaagctaaaaatatcacttttgtttttggaactcagatgtggtggtcaagtc 20198626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 15484225 - 15484341
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatg 110  Q
    |||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||| ||||  ||||  ||||||||||| ||| || | ||    
T  15484225 tgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttacggtatgcagagatggtggtcaagccctttagcttg 15484324  T
Q  111 tttaggaattggctaac 127  Q
    ||| || |||| |||||    
T  15484325 tttgggcattgactaac 15484341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 25873559 - 25873640
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaa 97  Q
    |||||| |||| ||| | || ||||| || ||||||||||||||||| || ||||||| ||| ||||||  |||||||||||    
T  25873559 gataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctatctttgtttttggaactcagcagtggtggtcaa 25873640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 27968891 - 27968846
Alignment:
Q  57 aaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||||||  ||||||| ||| ||||||||||||||||||||||||    
T  27968891 aaaagccacttttgtttttggcactcagatgtggtggtcaagtcct 27968846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5021004 - 5021216
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5021004 gtcccgcggttgttggataagattaaattgttatcattagggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 5021103  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |    
T  5021104 ctataatatgtttaggaattggttaaccactgctagtttctcttattttggactttgtaacactttgtatcttgtagtagtttcttaggcacaccttgtg 5021203  T
Q  201 cttggaaaatgct 213  Q
    |||| ||| ||||    
T  5021204 cttgaaaattgct 5021216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 37724323 - 37724421
Alignment:
Q  7 aggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagc-catgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  37724323 aggttgttggataagattaaattgttatcattagggtggctgaaagctaaaaaaactcatgtttgtttatggtactcagatgtggtggtcaagtcctat 37724421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 26078828 - 26078957
Alignment:
Q  2 tcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcc 101  Q
    |||| |||||||| |||||||||||| ||||||  |||| ||| ||||||||||||||| |||  ||||||| ||||||||||| ||||||||||||||     
T  26078828 tccctaggttgtttgataagattaaactgttattgttagcgtggctgaaagctaaaaaaaccacatttgtttttggtactcagaggtggtggtcaagtca 26078927  T
Q  102 tataacatgtttaggaattggctaaccact 131  Q
    ||| || ||| | || ||||||||||||||    
T  26078928 tatgacttgtctgggcattggctaaccact 26078957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 26102615 - 26102744
Alignment:
Q  2 tcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcc 101  Q
    |||| |||||||| |||||||||||| ||||||  |||| ||| ||||||||||||||| |||  ||||||| ||||||||||| ||||||||||||||     
T  26102615 tccctaggttgtttgataagattaaactgttattgttagcgtggctgaaagctaaaaaaaccacatttgtttttggtactcagaggtggtggtcaagtca 26102714  T
Q  102 tataacatgtttaggaattggctaaccact 131  Q
    ||| || ||| | || ||||||||||||||    
T  26102715 tatgacttgtctgggcattggctaaccact 26102744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43571861 - 43571638
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||| ||||||||| ||||||||||||| ||| |||| || ||||| ||||||  | ||||||||| ||||||||||||||||||||| ||||    
T  43571861 gtcccaaggttattggataaggttaaattgttatcgttacggtggcttaaagcaaaaaaaaacgtgtttgtttttggtactcagatgtggtggtctagtc 43571762  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctc-ttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttga 199  Q
    || |   |||| |||| ||||| ||| | |||||   |  || || |||| |||| ||||||| |||||||||||||  ||  | ||||||||| ||||     
T  43571761 ctttgttatgtctaggcattggttaatccctgctttttgttctttgttttagactttgtaacattttgtatcttgtagcagaattctaggcacatcttgt 43571662  T
Q  200 gcttggaaaatgctaatgttgtgtt 224  Q
    |||||||| ||||| ||||||||||    
T  43571661 gcttggaatatgct-atgttgtgtt 43571638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 31025946 - 31026060
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| |||||||||||||||||||||||| |  | ||||| |    
T  31025946 gataatattaagttgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctttggcttgtttgg 31026045  T
Q  116 gaattggctaaccac 130  Q
    | |||||||||||||    
T  31026046 gcattggctaaccac 31026060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 19728180 - 19728092
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||    
T  19728180 gataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctat 19728092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 18670868 - 18670782
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaa 97  Q
    |||| |||||| ||||||||||||| |||||||| |||||||||||||| |   |||||||||||||||| |||| |||||||||||    
T  18670868 tgttagataaggttaaattgttatctttagggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaa 18670782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 18767107 - 18767022
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| ||  |||||||||||||||| ||||  ||||||||    
T  18767107 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggctgtgtttgtttatggtacgcagagatggtggtc 18767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 6909750 - 6909662
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||||| |||||||| || |||||||| | |||||||||||| ||  |||||||||| ||||| |||| ||||||||||||    
T  6909750 ttgttagataagatcaaattgttgtctttagggtggccgaaagctaaaaaggctgtgtttgtttacggtacgcagaggtggtggtcaag 6909662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 34344501 - 34344413
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||  |||||||| |||||||||||||| |   |||||||||||||||| |||| ||||||||||||    
T  34344501 ttgttagataaggtcaaattgttatatttagggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaag 34344413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 9975519 - 9975440
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||||||||||| ||| |||| |||||||||| ||| | ||||||||||| || ||| |||| ||||||||||||||||    
T  9975519 ttaaattgttatctttaaggtggctgaaagctagaaatgtcatgtttgtttttgatacacagaggtggtggtcaagtcct 9975440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 42430982 - 42430903
Alignment:
Q  52 gctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaattggctaaccact 131  Q
    |||||||||||||| ||||| |||||||| |||| ||||||||| || ||| || | |||||||| ||||||||||||||    
T  42430982 gctaaaaaagccatttttgtctatggtacacagaggtggtggtctagccctttagcttgtttaggtattggctaaccact 42430903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 47106057 - 47106143
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| || ||||||||||| |||| |||||| ||||||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||    
T  47106057 gataaaatcaaattgttatcgttagtgtgacttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcct 47106143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 34458606 - 34458685
Alignment:
Q  17 ataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  34458606 ataaggttaaattgttatcttttgggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 34458685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 13554625 - 13554711
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| |||||||| |||| ||| || ||||||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||    
T  13554625 gataaaattaagttgttatcgttagtgtggcttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcct 13554711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 38780697 - 38780775
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggt 94  Q
    |||||| |||||||||||||  ||||||  ||||||||||| || | ||||||||||| ||||||||| | ||||||||    
T  38780697 gataaggttaaattgttatctctagggtcgctgaaagctaataatgtcatgtttgtttttggtactcataggtggtggt 38780775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 41801153 - 41801068
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| |||||||||||| ||| ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  41801153 ttgttagataaggttaaattgttat-atttgggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 41801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 42565522 - 42565436
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| |||||||| |||| ||| || ||||||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||    
T  42565522 gataaaattaagttgttatcgttagtgtggcttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcct 42565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 43021946 - 43022034
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| ||||| | |||||| ||||  ||||||| ||| |||||||||||||  |||||||||||    
T  43021946 gataaaattaagttgttatctttagcgtggctgaaggttaaaaatgccacttttgtttttggaactcagatgtggtaatcaagtcctat 43022034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 5326457 - 5326382
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||||||||||  |||||||| ||||||| || || | ||||||||||| ||| || || ||||||||||||||    
T  5326457 ttaaattgttatctctagggtgattgaaagccaacaatgtcatgtttgtttttggcacacatatgtggtggtcaag 5326382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 41339211 - 41339136
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||||||||||  ||||||| |||||||| || || | ||||||||||| ||| || || ||||||||||||||    
T  41339211 ttaaattgttatctctagggtggctgaaagccaacaatgtcatgtttgtttttggcacgcatatgtggtggtcaag 41339136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 37724464 - 37724532
Alignment:
Q  146 ttttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgcta 214  Q
    ||||||||| ||||||| |||||||||||||  ||  ||||| ||| |||||| ||||||||| |||||    
T  37724464 ttttggactatgtaacattttgtatcttgtagcagaatcctaagcataccttgtgcttggaaactgcta 37724532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16873924 - 16874145
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  16873924 gtcccgaagttgctggataaaattaaattgttatcattagggtggctgaaagctaaaaaagccatgtttatttatggtactcatatgtggtggtcaagtc 16874023  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |    
T  16874024 ctataacatgtttaggaattggctaaccactactagattctcttactttggactttgtaacactttgtatcttgtagtagtttcctaggcacaccttgtg 16874123  T
Q  201 cttggaaaatgctaatgttgtg 222  Q
    |||||||| ||||  |||||||    
T  16874124 cttggaaattgcttctgttgtg 16874145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 39730279 - 39730450
Alignment:
Q  51 agctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaattggctaaccactgctagattctcttattttg 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39730279 agctaaaaaaaccatgtttgtttatggtactcagatgtggtggtcaagtcccataacatgtttaggaattggctaaccactgctagattctcttattgtg 39730378  T
Q  151 gactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgctaatgttgtg 222  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||  |||||||    
T  39730379 gactttgtaacactttgtatcttatagtagtttcctaggcacaccttgtgcttggaaattgctcttgttgtg 39730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 48321743 - 48321822
Alignment:
Q  145 attttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgctaatgttgtgtt 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |  |||||||||    
T  48321743 attttggactctgtaacactttgtatcttgtagtagtttcctaggcacaccttgtgcttggaaaatgttgttgttgtgtt 48321822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 34854082 - 34854173
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    |||| |||||| |||||||||||||  ||||||| |||||||||||||| ||||||||||||| ||||||  ||| ||||||||||||||||    
T  34854082 tgttagataaggttaaattgttatctctagggtggctgaaagctaaaaaggccatgtttgtttttggtacgtagaggtggtggtcaagtcct 34854173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 44929926 - 44929843
Alignment:
Q  19 aagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    |||||||| | |||||| |||| ||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  44929926 aagattaagtcgttatctttagtgtggctgaaagctataaaagtcatgtttgtttttggtactcagatgtggtggtcaagtcct 44929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 41503347 - 41503436
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaa-gctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| |||||  ||||||| |||| |||||||||| |||||| ||||||  ||||||| ||| ||||||||||||||||||||||||||    
T  41503347 gataaaattaagatgttatctttagcgtgactgaaaagctaaacaagccacttttgtttttggaactcagatgtggtggtcaagtcctat 41503436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 49265411 - 49265497
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| ||||||||||||| ||| || ||||||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||    
T  49265411 gataaaattaagttgttatcattagtgtggcttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcct 49265497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 1954544 - 1954602
Alignment:
Q  164 tttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgctaatgttgtg 222  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||| ||||  |||||||    
T  1954544 tttgtatcttgtagtagcttcctaggcacaccttgtgcttggaaattgcttttgttgtg 1954602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 39730235 - 39730272
Alignment:
Q  63 catgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39730235 catgtttgtttatggtactcagatgtggtggttaagtc 39730272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 20795361 - 20795247
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    ||||| ||||| |||||||| |||| ||| || ||||||||||| | ||  ||||||| ||| | ||| |||||||||||| ||||| || | ||||| |    
T  20795361 gataaaattaagttgttatcgttagtgtggcttaaagctaaaaatgtcacttttgtttttggaagtcatatgtggtggtcatgtcctttagcttgtttgg 20795262  T
Q  116 gaattggctaaccac 130  Q
    | ||||| |||||||    
T  20795261 gcattggataaccac 20795247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 37139582 - 37139684
Alignment:
Q  25 aaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaattggct 124  Q
    ||||||||||| ||||  || |||||||| ||||| |  |||||||| | ||| || |||| |||||||||||| ||| |||| ||||| || |||||||    
T  37139582 aaattgttatcgttagtatggctgaaagccaaaaatgttatgtttgtgtttggcacgcagaggtggtggtcaagccctttaacttgtttgggtattggct 37139681  T
Q  125 aac 127  Q
    |||    
T  37139682 aac 37139684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 39429962 - 39429885
Alignment:
Q  25 aaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||||||||| |||| ||| || ||||||||||| ||||  ||||||| ||| ||||| ||||||||| || |||||    
T  39429962 aaattgttatcgttagtgtggcttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggccatgtcct 39429885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 44415483 - 44415528
Alignment:
Q  52 gctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaa 97  Q
    ||||||||||| |||||||||| |||| |||||| |||||||||||    
T  44415483 gctaaaaaagctatgtttgtttgtggtgctcagaggtggtggtcaa 44415528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33804489 - 33804266
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33804489 gtcccaaggttgttggataagattaaattgttatcattagggtggcttaaagctaaaaatgccatgtttgtttatggtactcagatgtggtggtcaagtc 33804390  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgag 200  Q
    |||| |||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |    
T  33804389 ctatgacagttttaggaattggctaaccaatgctatattctcttattttggactctgtaactctttgtatcttgtaacagtttcctaggcataccttgtg 33804290  T
Q  201 cttggaaaatgctaatgttgtgtt 224  Q
    |||||||| |||||  ||||||||    
T  33804289 cttggaaattgctaccgttgtgtt 33804266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4474406 - 4474184
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||     ||||||||||||||| ||||||||||||||    
T  4474406 gtccctaggttgttggataagattaaattgttatccttaaggtggctgaaagctaaaaaagccat-----tttatggtactcagaggtggtggtcaagtc 4474312  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattctcttattttg--gactctgtaacactttgta-tcttgtaatag-tttcctaggcacacct 196  Q
    ||||  |||||||||| ||||| ||| ||||||||| || | || || ||  ||||| | ||||||||||| | ||||||| | |||  |||||||||||    
T  4474311 ctatggcatgtttaggcattggataatcactgctagcttttatttttctgttgactcggaaacactttgtatttttgtaatggtttttttaggcacacct 4474212  T
Q  197 tgagcttggaaaatgctaatgttgtgtt 224  Q
    || ||||| |||||||||  ||||||||    
T  4474211 tgtgcttgaaaaatgctacggttgtgtt 4474184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 23066491 - 23066579
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||||||||| |   |||||||||||||||| |||| ||||||||||||    
T  23066491 ttgttagataagatcaaattgttatctttagggtggctgaaagctaaaaacgttgtgtttgtttatggtacgcagaggtggtggtcaag 23066579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 31297585 - 31297673
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||| ||| |||||| ||||||| || ||||||||||||||||| |||| ||||||||||||    
T  31297585 ttgttagataaggtcaaattgttatctttagagtggctgaaaactaaaaaggcaatgtttgtttatggtacgcagaggtggtggtcaag 31297673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11468296 - 11468167
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| |||||| | |||||||||||||  |||||  ||| |||  |||| ||||||||| |||| ||||||| ||||||| | | |||||||||||| |    
T  11468296 gtccctaggttgcttgataagattaaatctttatccctagcgtggttgaaggctaaaaaaaccatttttgtttttggtacttaaaggtggtggtcaagcc 11468197  T
Q  101 ctataacatgtttaggaattggctaaccac 130  Q
    || | || |||||||||||||| |||||||    
T  11468196 ctttgacttgtttaggaattggttaaccac 11468167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 6004667 - 6004581
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| || ||| ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||  |||||||||    
T  6004667 ttgttagaaaaggttaaattgttatctttggggtggctgaaagctaaaaaagttgtgtttgtttatggtacgcagagatggtggtca 6004581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 24749338 - 24749230
Alignment:
Q  19 aagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaa 118  Q
    |||||||||||||||||  ||||||| |||||| | |||||  |||||||||||| ||| |||||||  || |||||||| ||| || | ||||| || |    
T  24749338 aagattaaattgttatctctagggtggctgaaaaccaaaaataccatgtttgtttttggcactcagagatgatggtcaagccctttagcttgtttgggca 24749239  T
Q  119 ttggctaac 127  Q
    |||||||||    
T  24749238 ttggctaac 24749230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 33572647 - 33572731
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||| ||||||||||||| |||||||||| |||||||  |||  ||| ||| ||| ||||| ||||||||||||||||    
T  33572647 gataaaattaagttgttatcattagcgtgactgaaatctaaaaataccacttttctttttggaactcaaatgtggtggtcaagtc 33572731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 4406713 - 4406630
Alignment:
Q  8 ggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggt 91  Q
    |||||||||||||| ||||| |||| || ||||| || ||||||||||| |||||||  |||| || ||||||||||| |||||    
T  4406713 ggttgttggataaggttaaaatgttgtctttaggttggctgaaagctaagaaagccacatttggttttggtactcagaggtggt 4406630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 6008197 - 6008111
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||  ||||  |||||||||    
T  6008197 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtatgcagagatggtggtca 6008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 26010571 - 26010485
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || ||||| || ||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  26010571 ttgttagataaggttaaattgttatctttggggtggcttaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 26010485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 9051186 - 9051099
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||| |||||| ||||||||||||| || ||||| |||||||| ||||  |   ||||||| |||||||||||||  |||||||||||    
T  9051186 tgttagataaggttaaattgttatctttggggtggctgaaagcgaaaagggttgtgtttgtctatggtactcagagttggtggtcaag 9051099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 13085232 - 13085118
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| |  |  ||||||| ||| || ||| ||||||||| ||||||| |    ||||| |    
T  13085232 gataaaattaagttgttatcgttagtgtggctgaaagctaaaaatgtgacttttgtttttggaacccagttgtggtggttaagtcctttggtttgtttgg 13085133  T
Q  116 gaattggctaaccac 130  Q
    |||||||||||||||    
T  13085132 gaattggctaaccac 13085118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 24378476 - 24378390
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || |||||  |||||| |||||| |   |||||||||||||||| ||||  |||||||||    
T  24378476 ttgttagataaggttaaattgttatctttggggtggttgaaagttaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 24378390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20669194 - 20668970
Alignment:
Q  1 gtcccgaggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20669194 gtcccgaggttgttggataagattaaattgttatcattagggtggatgaaggctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 20669095  T
Q  101 ctataacatgtttaggaattggctaaccactgctagattc-tcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttga 199  Q
    |||| |||||||||||  ||| |||| |||||||||||||   ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||     
T  20669094 ctatgacatgtttaggctttgactaatcactgctagattcgatttattttagactctgtaagactttgtatcttgtagtagtttcctaggcacaccttgt 20668995  T
Q  200 gcttggaaaatgctaatgttgtgtt 224  Q
    ||||||||||||||| |||||||||    
T  20668994 gcttggaaaatgctactgttgtgtt 20668970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 4525074 - 4525188
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||| || |||| ||| ||||||||||||||||||  | ||| | |    
T  4525074 gataagattaaattgttatctttagcgtgactgaaagctaaaaaagccacttttgtttttgatactaagacgtggtggtcaagtcctatggcttgtctgg 4525173  T
Q  116 gaattggctaaccac 130  Q
    | |||||||||||||    
T  4525174 gcattggctaaccac 4525188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 35122969 - 35122860
Alignment:
Q  103 ataacatgtttaggaattggctaaccactgctagattctcttattttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagct 202  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||          |||||||||||| ||||||||||||||||||||| |||    
T  35122969 ataacatgtttaggaattggctaactactactagattatcttattttggact----------ttgtatcttgtagtagtttcctaggcacaccttgtgct 35122880  T
Q  203 tggaaaatgctaatgttgtg 222  Q
    |||||| ||||  |||||||    
T  35122879 tggaaattgcttttgttgtg 35122860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 22540364 - 22540250
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    |||||||||||||  || || |||| ||||||||  ||||||||||| || ||||||| ||||| ||||| |||||||| ||| ||| | || |||||||    
T  22540364 gataagattaaatctttgtccttagtgtgactgacggctaaaaaagctatatttgtttttggtattcagaagtggtggttaagccctttgacttgtttag 22540265  T
Q  116 gaattggctaaccac 130  Q
    | |||||||||||||    
T  22540264 gcattggctaaccac 22540250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42953940 - 42954028
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| ||||||| |||||| ||||  ||||||| ||| ||||| ||||||||||||||||||||    
T  42953940 gataaaattaagttgttatctttagcgtggctgaaagataaaaatgccacttttgtttttggaactcaaatgtggtggtcaagtcctat 42954028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 26693626 - 26693540
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  26693626 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 26693540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 37615262 - 37615176
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| |||||||| |||| | | ||||||| |||||| ||||  ||||||| ||| ||||||||||||||||||||||||    
T  37615262 gataaaattaagttgttatcgttagtgcggctgaaagttaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcct 37615176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 50451777 - 50451691
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaa 97  Q
    |||| |||||| ||||||||||||| |||||  | |||||||||||||| |   |||||||||||||||| |||| |||||||||||    
T  50451777 tgttagataaggttaaattgttatctttaggagggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaa 50451691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 9993285 - 9993374
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctata 105  Q
    ||||| ||||| |||||||| |||  ||| |||||| ||||||| | ||  ||||||| ||| |||||||||||||||||||||||||||    
T  9993285 gataaaattaagttgttatcgttatagtggctgaaaactaaaaatgtcacttttgtttttggaactcagatgtggtggtcaagtcctata 9993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 42169473 - 42169548
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||||||||||| ||||| || |||||||| ||| | | ||||||||||| ||| || |||| ||||||||||||    
T  42169473 ttaaattgttatcgttaggttggctgaaagcaaaagatgtcatgtttgtttttggcacgcagaggtggtggtcaag 42169548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 4641121 - 4641178
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgttt 73  Q
    |||||| |||||||||||||  |||||||  |||||||||||||  ||||||||||||    
T  4641121 gataaggttaaattgttatctctagggtggttgaaagctaaaaataccatgtttgttt 4641178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 35957559 - 35957627
Alignment:
Q  146 ttttggactctgtaacactttgtatcttgtaatagtttcctaggcacaccttgagcttggaaaatgcta 214  Q
    ||||||||| ||||||| |||||||||||||  ||  | ||||||||| |||| |||||||| ||||||    
T  35957559 ttttggactatgtaacattttgtatcttgtagcagaattctaggcacatcttgtgcttggaatatgcta 35957627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 42249886 - 42249914
Alignment:
Q  67 tttgtttatggtactcagatgtggtggtc 95  Q
    |||||||||||||||||||||||||||||    
T  42249886 tttgtttatggtactcagatgtggtggtc 42249914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 43254173 - 43254287
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||| ||||  ||||||| ||| |||||||||||||||||||||||| | || ||||| |    
T  43254173 gataaaattaaattgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctttgacttgtttgg 43254272  T
Q  116 gaattggctaaccac 130  Q
    | |||||||||||||    
T  43254273 gcattggctaaccac 43254287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 7555140 - 7555056
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    |||||||||||||||||||| ||||| || ||||||||||||| || ||||||||| | |||||||| || ||||||||||||||    
T  7555140 gataagattaaattgttatcgttaggatggctgaaagctaaaatagtcatgtttgtatttggtactcggaggtggtggtcaagtc 7555056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 23942016 - 23941928
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| ||||  |||||||||||    
T  23942016 ttgttagataaggtcaaattgttatctttagagtgactgaaagctaaaaaggcaatgtttgtttatggtacgcagagatggtggtcaag 23941928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 27083313 - 27083226
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||| |||||| |||||||||||||  |||| |||||||||| |||||| | ||||||||||| | ||||||||| |||||| |||||    
T  27083313 tgttagataaggttaaattgttatccataggatgactgaaagttaaaaatgtcatgtttgtttttcgtactcagaggtggtgatcaag 27083226  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 30261381 - 30261299
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||| |||||||||||||   ||||| ||||||||||||||| | ||| ||||||| ||||||||||  ||||||||||||    
T  30261381 gataaggttaaattgttatctcaagggtaactgaaagctaaaaatgtcatatttgtttttggtactcagtagtggtggtcaag 30261299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 11394793 - 11394881
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| ||||||||||||||   ||  ||| ||| ||| ||||||||||||||||||||||||||    
T  11394793 gataaaattaagttgttatctttagtgtggctgaaagctaaaaatatcacttttatttttggaactcagatgtggtggtcaagtcctat 11394881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 24793444 - 24793357
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| |||  |||| |||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||    
T  24793444 gataaaattaagttgttatctttagcgtggttgaaggctaaaaatgccacttttgttt-tggaactcagatgtggtggtcaagtcctat 24793357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 43613506 - 43613590
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    |||| |||||| | ||||||||||| | |||||| ||||| |||||||| ||||||||| | ||||| || ||||||||||||||    
T  43613506 tgttagataaggtcaaattgttatcttcagggtggctgaaggctaaaaatgccatgtttatgtatggcacccagatgtggtggtc 43613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 30501670 - 30501579
Alignment:
Q  7 aggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||| | |||||||||||||  || || |||| |||  |||  |||||||||||||||||||||| ||||||||| | ||||||||||||    
T  30501670 aggttgcttgataagattaaatctttgtccttagcgtggttgacggctaaaaaagccatgtttgtttttggtactcataggtggtggtcaag 30501579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 44083453 - 44083538
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    ||||| |||||| ||||||||||||| || |||||  ||||||||||||| |   |||||||||||||||| ||||  ||||||||    
T  44083453 ttgttagataaggttaaattgttatctttggggtggttgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtc 44083538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 40467525 - 40467437
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||| ||| ||||||||||| ||  | ||||||||||||||||| ||||  |||| ||||||    
T  40467525 ttgttagataaggtcaaattgttatctttagagtggctgaaagctaagaagacaatgtttgtttatggtacgcagagatggtagtcaag 40467437  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 6900582 - 6900512
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtgg 93  Q
    ||||||||| |||  |||||||||||||||| ||||| | ||||||||||| ||| || |||| |||||||    
T  6900582 ttaaattgtgatctctagggtgactgaaagccaaaaatgtcatgtttgtttttggcacgcagaggtggtgg 6900512  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 4040494 - 4040580
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    |||||||||||| ||||||| |||| ||| |||||||||||||||||||  ||||||| ||||||| | | ||||||||||||||||    
T  4040494 gataagattaaactgttatcgttagcgtggctgaaagctaaaaaagccacatttgtttttggtactgataggtggtggtcaagtcct 4040580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 32244049 - 32244137
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    ||||| ||||| |||||||| |||| ||| |||||||||||||| ||||  ||||||| ||  ||||||||||||||||||||||||||    
T  32244049 gataaaattaagttgttatcgttagcgtggctgaaagctaaaaatgccacttttgtttttgaaactcagatgtggtggtcaagtcctat 32244137  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 26490691 - 26490782
Alignment:
Q  7 aggttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||| | |||||||||||||||||||| || |  || |||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||    
T  26490691 aggttgcttgataagattaaattgttatctttggcatggctgaaagctaaaaaagtcatgtttgtatttggtactcagaagtggtagtcaag 26490782  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 3119660 - 3119546
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttag 115  Q
    ||||| ||||| |||||||| |||| ||| | |||||||||||| ||||  ||||||| ||| |||||||||||||||||||||| | |  | ||||| |    
T  3119660 gataaaattaagttgttatcgttagtgtggcggaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcatttggcttgtttgg 3119561  T
Q  116 gaattggctaaccac 130  Q
    | |||||||||||||    
T  3119560 gcattggctaaccac 3119546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 8066667 - 8066755
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||||||| ||||||| ||||||  | |||||||||| |||||| |||| ||||||||||||    
T  8066667 ttgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaagacaatgtttgtttttggtacgcagaggtggtggtcaag 8066755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 35487544 - 35487456
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||| |||||| | ||||||||||| |||||||| || ||||||||||| || ||| ||||||||||||  |||| ||||||||||||    
T  35487544 ttgttagataaggtcaaattgttatctttagggtggctaaaagctaaaaatgctatgcttgtttatggtatgcagaggtggtggtcaag 35487456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 36803598 - 36803494
Alignment:
Q  23 ttaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatgtttaggaattgg 122  Q
    ||||||||||||||||||| || |||||||| ||||| | ||||||||||| ||| || |||| ||||||||||||  || |||| ||||| |  |||||    
T  36803598 ttaaattgttatcattaggttggctgaaagcaaaaaatgtcatgtttgtttttggcacgcagaggtggtggtcaagctctttaacttgtttggatattgg 36803499  T
Q  123 ctaac 127  Q
    |||||    
T  36803498 ctaac 36803494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 37139365 - 37139307
Alignment:
Q  46 ctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctat 104  Q
    |||||||||||||| | ||| ||||||| ||| ||||||||||||||||||||||||||    
T  37139365 ctgaaagctaaaaatgtcatttttgtttttggaactcagatgtggtggtcaagtcctat 37139307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 37643197 - 37643111
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  37643197 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagttggtggtca 37643111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 21614325 - 21614241
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    |||| |||||||| |||||||||||  ||||||| ||||| |||||||| ||| ||||||| | ||| || ||||||||||||||    
T  21614325 tgttagataagatcaaattgttatctctagggtggctgaaggctaaaaatgccgtgtttgtgtttggcacccagatgtggtggtc 21614241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 9669453 - 9669539
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcct 102  Q
    ||||| ||||| |||||||| |||| ||| || ||||||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||    
T  9669453 gataaaattaagttgttatcgttagtgtggcttaaagctaaaaaggccacttttgtttttggaactcatatgtggtggtcatgtcct 9669539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 33913072 - 33912986
Alignment:
Q  10 ttgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtca 96  Q
    ||||| |||||| ||||||||||||  || ||||| |||||||||||||| |   |||||||||||||||| ||||  |||||||||    
T  33913072 ttgttagataaggttaaattgttatttttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 33912986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 22052320 - 22052238
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    ||||||||||| ||||| || ||||| || || |||||||||||||| |  ||||||| ||| ||||||  ||||||||||||    
T  22052320 gataagattaagttgttgtctttaggttggcttaaagctaaaaaagctacttttgtttttggaactcagcagtggtggtcaag 22052238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 31594247 - 31594165
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||| |||||||| | || ||||| || ||||||||||||||||| |  ||||||| ||| ||||||  ||||||||||||    
T  31594247 gataaggttaaattgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaag 31594165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 38443857 - 38443895
Alignment:
Q  67 tttgtttatggtactcagatgtggtggtcaagtcctata 105  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  38443857 tttgtttttggaactcagatgtggtggtcaagtcctata 38443895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 1145 - 1061
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtc 100  Q
    ||||| ||||| ||||||||||||| |||||||||| |||||||  |||  ||| ||| ||| ||||| ||||||||||||||||    
T  1145 gataaaattaagttgttatcattagcgtgactgaaatctaaaaataccacttttctttttggaactcaaatgtggtggtcaagtc 1061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 72145 - 72261
Alignment:
Q  11 tgttggataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctataacatg 110  Q
    |||| |||||| ||||||||||||| || |||||| ||||||||||||| |   |||||||||||||||  ||||  ||||||||||  ||| || | ||    
T  72145 tgttagataaggttaaattgttatctttggggtgattgaaagctaaaaatgttgtgtttgtttatggtatgcagagttggtggtcaaaccctttagcttg 72244  T
Q  111 tttaggaattggctaac 127  Q
    ||| || ||||||||||    
T  72245 tttgggcattggctaac 72261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 41822 - 41749
Alignment:
Q  22 attaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtc 95  Q
    |||||||||||||| || ||||| |||||||||||||| |   |||||||||||||||| ||||  ||||||||    
T  41822 attaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtc 41749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 16049 - 16131
Alignment:
Q  16 gataagattaaattgttatcattagggtgactgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 98  Q
    |||||| | ||||||||| |  ||||||| ||||||||||| || | ||||||||||| |||||  |||| ||||||||||||    
T  16049 gataaggtcaaattgttagctctagggtggctgaaagctaagaatgtcatgtttgtttttggtatacagaggtggtggtcaag 16131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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