View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7201_low_2 (Length: 339)
Name: NF7201_low_2
Description: NF7201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7201_low_2 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 22079972 - 22079661
Alignment:
| Q |
19 |
caaatctctgtggaaaattgctgttcgagttgttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22079972 |
caaatctctgtggaaaattgctgttcgagttgttgacatgtggactgttgcaaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagag |
22079873 |
T |
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| Q |
119 |
gtgggtttcaaagcacatatcaatgatggttacaacatcactgatctataattaattttaatagaaactaatgttttaaaaagtatgtataattcacttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22079872 |
gtgggtttcaaagcacatatcaatgatggttacaacatcactcatctataattaattttaatagaaactaatgttttaaaaagtatgtataattcacttc |
22079773 |
T |
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| Q |
219 |
taatttccatcagggtgatcgtattcaaataattctgccatctgaactcaaagatcagtttaagggtataattgctgagaacactacctttactctgcaa |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
22079772 |
taatttccatcaggttgatcgtattcaaataattctgccatttgaactcaaagatcagtttaagggtagaattgttgagaacactacctttactctgcaa |
22079673 |
T |
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| Q |
319 |
aactttgatgtc |
330 |
Q |
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|||||||||||| |
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| T |
22079672 |
aactttgatgtc |
22079661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 1522591 - 1522736
Alignment:
| Q |
29 |
tggaaaattgctgttcgagttgttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttca |
128 |
Q |
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| T |
1522591 |
tggaaaattgttgttcgagttgttgacatgtggactgttgcaaattcaaagaagaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttga |
1522690 |
T |
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| Q |
129 |
aagcacatatcaatgatggttacaacatcactgatctataattaatt |
175 |
Q |
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| T |
1522691 |
aagcactcaactatg-tggttacaacatcactaatctatatttaatt |
1522736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 23700271 - 23700170
Alignment:
| Q |
19 |
caaatctctgtggaaaattgctgttcgagttgttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagag |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
23700271 |
caaatctctgtggaaaattgatgttcgagttgttgatttgtggactgttactaattcaaagagcaaacaacatattgagatggtgttgtgtgacaaagag |
23700172 |
T |
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| Q |
119 |
gt |
120 |
Q |
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|| |
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| T |
23700171 |
gt |
23700170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 23700060 - 23699962
Alignment:
| Q |
228 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagatcagtttaagggtataattgctgagaacactacctttactctgcaaaactttga |
326 |
Q |
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|||||||||||| |||||| ||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||| |||| || ||||||||| ||||||| |
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| T |
23700060 |
tcagggtgatcgaattcaagtaattttgccaactgaattcaaagataagtttaagagtagaattgctgagaacgctactttcactctgcaagactttga |
23699962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 125106 - 125005
Alignment:
| Q |
20 |
aaatctctgtggaaaattgctgttcgagttgttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagagg |
119 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
125106 |
aaatctttgtggaaaattgctgttcgagttgttgatttatggactgttggaaattcaaagaacaaacaacatattgagatggtggggtgcgacaaagagg |
125007 |
T |
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| Q |
120 |
tg |
121 |
Q |
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|| |
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| T |
125006 |
tg |
125005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 124897 - 124796
Alignment:
| Q |
228 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagatcagtttaagggtataattgctgagaacactacctttactctgcaaaactttgat |
327 |
Q |
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||||||||||||||||||| | ||| ||||| |||| ||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||| |
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| T |
124897 |
tcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaactttgat |
124798 |
T |
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| Q |
328 |
gt |
329 |
Q |
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|| |
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| T |
124797 |
gt |
124796 |
T |
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