View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7201_low_4 (Length: 393)
Name: NF7201_low_4
Description: NF7201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7201_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 12191341 - 12191709
Alignment:
| Q |
10 |
gcagagacgccttccaacaacgcatcaatttccacaatgatctcatgttcacagtgccaatattgggnnnnnnnctggttcaaaccagtgtattattact |
109 |
Q |
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| T |
12191341 |
gcagagacgccttccaacaatgcatcaatttccacaatgatctcatgttcaccatgccaatattgggaaaaaaactggttcaaaccggtgtattattact |
12191440 |
T |
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| Q |
110 |
acaatggtgttctgcaaccaataactggatcatcaacgaaatattactctagtccaaagattaatatgatgctgctgataattcatatgaaatatagttg |
209 |
Q |
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| T |
12191441 |
acaatggtgttctgcaaccaataactggatcatcaacgaaatattacactagtccaaagattaatatgatgctgctgataattcatatgaaatatagttg |
12191540 |
T |
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| Q |
210 |
cttacaatnnnnnnnnnngcatggaaataacattgcctgaataaaag----tataactaaaatagcatctcaaacagctcatgaaatcttctttcttcaa |
305 |
Q |
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| T |
12191541 |
cttacaat--taaaaaaagcatggaaataacattgcctgaataaaagtatatataactaaaatagcatctcaaacagctcatgaaatcttctttcttcaa |
12191638 |
T |
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| Q |
306 |
atgaaactttacacacaaatttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttg |
376 |
Q |
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| T |
12191639 |
atgaaactttaaacacaaatttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttg |
12191709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 12902865 - 12902923
Alignment:
| Q |
303 |
caaatgaaactttacacacaaatttttcctcatcaatcaactcaaagtaacaaatgtct |
361 |
Q |
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| T |
12902865 |
caaatgaaactttaaacacacattttttctcatcaattaactcaaacaaacaaatgtct |
12902923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 12185812 - 12185840
Alignment:
| Q |
19 |
ccttccaacaacgcatcaatttccacaat |
47 |
Q |
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| T |
12185812 |
ccttccaacaacgcatcaatttccacaat |
12185840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 12185894 - 12185942
Alignment:
| Q |
98 |
tgtattattactacaatggtgttctgcaaccaataactggatcatcaac |
146 |
Q |
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| T |
12185894 |
tgtactattaatacaatggtgttttgcaaccaataattgggtcatcaac |
12185942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 7338613 - 7338664
Alignment:
| Q |
325 |
tttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttg |
376 |
Q |
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| T |
7338613 |
ttttttctcatcaatcaactcaaagtaataagtgtctccaatctccaatttg |
7338664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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