View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7201_low_5 (Length: 392)

Name: NF7201_low_5
Description: NF7201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7201_low_5
NF7201_low_5
[»] chr7 (5 HSPs)
chr7 (29-203)||(12239489-12239666)
chr7 (26-206)||(23757034-23757215)
chr7 (22-68)||(34091475-34091521)
chr7 (139-206)||(37469063-37469130)
chr7 (252-295)||(33222143-33222186)
[»] chr3 (4 HSPs)
chr3 (40-202)||(52653858-52654023)
chr3 (29-244)||(33709903-33710129)
chr3 (26-112)||(40574273-40574359)
chr3 (160-206)||(16729894-16729940)
[»] chr8 (4 HSPs)
chr8 (36-244)||(12729471-12729683)
chr8 (29-196)||(44729151-44729321)
chr8 (96-202)||(28695986-28696094)
chr8 (188-229)||(18609067-18609108)
[»] chr5 (5 HSPs)
chr5 (29-206)||(9851308-9851486)
chr5 (29-205)||(29006559-29006737)
chr5 (252-295)||(6371174-6371217)
chr5 (96-196)||(15205474-15205576)
chr5 (105-206)||(36203207-36203310)
[»] chr1 (4 HSPs)
chr1 (36-208)||(49053874-49054049)
chr1 (36-208)||(49061454-49061629)
chr1 (39-70)||(10917598-10917629)
chr1 (29-221)||(42263279-42263472)
[»] chr4 (6 HSPs)
chr4 (26-205)||(48779724-48779905)
chr4 (29-118)||(24391908-24391997)
chr4 (161-206)||(20251618-20251663)
chr4 (199-243)||(3425182-3425227)
chr4 (168-205)||(18670566-18670603)
chr4 (36-113)||(47078000-47078076)
[»] chr6 (2 HSPs)
chr6 (36-202)||(28612016-28612181)
chr6 (36-224)||(11932035-11932225)
[»] chr2 (3 HSPs)
chr2 (29-206)||(14218750-14218928)
chr2 (138-222)||(34680955-34681039)
chr2 (199-238)||(42779878-42779917)
[»] scaffold0007 (1 HSPs)
scaffold0007 (36-206)||(217830-217991)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 12239666 - 12239489
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccgg-ttggca-aagtgg 126  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||| |||||||||||||||||| ||| || || |||    
T  12239666 gatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacatacccttttgcatccggtttgacataactgg 12239567  T
Q  127 t-gggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatc 203  Q
    | ||| ||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||  ||||||||| ||||||    
T  12239566 tgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatc 12239489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 23757215 - 23757034
Alignment:
Q  26 attgatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggc-aaagt 124  Q
    ||||||||| |||||||||||||| | |||||||||||| | ||||  ||| | ||||||||||||||  |||||||||||||||| |||| ||  || |    
T  23757215 attgatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtatacccttttgcatctggttagcttaatt 23757116  T
Q  125 ggtgggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    ||| ||  |||| ||||||||  |||||| ||||||||| |  ||| | ||||||||| || ||||||||||||||||||||    
T  23757115 ggtagggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttc 23757034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 34091521 - 34091475
Alignment:
Q  22 attaattgatacgattggtgtgaatgtgcaagtcacgtcaaggattc 68  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  34091521 attaattcatacgattggtgtgaatgtgcaagtcacgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 37469063 - 37469130
Alignment:
Q  139 aacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||   || |||||||||||||||    
T  37469063 aacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttc 37469130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 33222186 - 33222143
Alignment:
Q  252 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 295  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  33222186 cactgtatcaaccttgtcttcaccgtttgttgatcatcatcttc 33222143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 52653858 - 52654023
Alignment:
Q  40 tgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatataccc-ttttgcatccggttggca-aagtggtg-ggacgaat 136  Q
    |||||||||||||||||||||||||||||||| ||||   ||||||||||||||| |||| || |||||||||||||||||| || ||||| || |||||    
T  52653858 tgtgaatgtgcaagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaat 52653957  T
Q  137 tgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcat 202  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||    
T  52653958 tgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcat 52654023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 33709903 - 33710129
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccg--atatacccttttgcatccggttggca-aagtg 125  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||    ||||||||| ||||  ||||||||||||||||||||||| || || ||    
T  33709903 gatacgcttggtgtgaatgtgcaagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactg 33710002  T
Q  126 gtgg-gacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgt--------tcatcttcttggtcaagt 216  Q
    |||| |  |||| || ||||| |||||||||||| ||||||||||||| |||||| |||||  |||||||||||        |||| ||||||||||||     
T  33710003 gtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttcttcatatcattttcttggtcaaga 33710101  T
Q  217 tattgcagtagactccaacacaggttct 244  Q
    |||||||| |||| ||||||||||||||    
T  33710102 tattgcagcagaccccaacacaggttct 33710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 40574359 - 40574273
Alignment:
Q  26 attgatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatcc 112  Q
    ||||||||| || |||||||||||||||||||||||| |||||||| ||||   |||||  |||||| ||||| || ||||||||||    
T  40574359 attgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattccatagtatcctgaaggtaattcgctgatatgccattttgcatcc 40574273  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 16729894 - 16729940
Alignment:
Q  160 cacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    |||||||||||||||||| |||||||  ||| |||||||||||||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttc 16729940  T

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Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 12729471 - 12729683
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatata-cccttttgcatccggttggca-aagtggtgg-gac 132  Q
    ||||||||||||||||||||| |||||||||| ||||||||   |||||||| |||||| |||| ||||||||||||||||||||| || |||||| | |    
T  12729471 ttggtgtgaatgtgcaagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggc 12729570  T
Q  133 gaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttcttggtcaagttattgcagtaga-ctc 231  Q
    |||| | |||||| |||||||||||| ||||||| ||||| |||| ||||| | | ||||||||||||||||||||| ||||| |||||||| ||| | |    
T  12729571 gaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttcttgatcaaggtattgcagcagatccc 12729670  T
Q  232 caacacaggttct 244  Q
    |||||||||||||    
T  12729671 caacacaggttct 12729683  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 44729151 - 44729321
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgata-tacccttttgcatccggttggca-aagt-g 125  Q
    |||||| ||||| |||||||||||||||||||||||||||||  ||||    |||||||||||||| || |||||| |||||||||||||||| || | |    
T  44729151 gatacgcttggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcg 44729250  T
Q  126 gtgggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcat 196  Q
      |||  ||||||||| ||| ||||||||| || ||||||||||||| |||||||||||| ||||||||||    
T  44729251 caggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcat 44729321  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 28696094 - 28695986
Alignment:
Q  96 tatacccttttgcatccggttggca-aagtggtg-ggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcat 193  Q
    |||||||||||||||| ||||| || || ||||| || |||||  |||||||  ||||||||||| ||||||||||||| |||||||| ||| |||||||    
T  28696094 tatacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcat 28695995  T
Q  194 catgttcat 202  Q
    |||||||||    
T  28695994 catgttcat 28695986  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 18609067 - 18609108
Alignment:
Q  188 cttcatcatgttcatcttcttggtcaagttattgcagtagac 229  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  18609067 cttcatcatgttcatcttcttagtcaagttattgcagcagac 18609108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 9851486 - 9851308
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggc-aaagtggt 127  Q
    |||||| ||||||||||||||||| |||| | ||| |||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||  || ||||    
T  9851486 gatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaactggt 9851387  T
Q  128 gggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
     ||  |||||||||||||  ||||||||||| ||||||||||||| ||||||||||||   ||||||||||||||||||    
T  9851386 agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttc 9851308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 29006559 - 29006737
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatata-cccttttgcatccggttggcaaag-tgg 126  Q
    |||||| |||||||||||||| | |||| |||||||||||||| |||||  |||| ||||||||| ||||| |||||||||||| |||||  |||  | |    
T  29006559 gatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactag 29006658  T
Q  127 tgggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatctt 205  Q
    |||| ||||| ||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  29006659 tggggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatctt 29006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 6371217 - 6371174
Alignment:
Q  252 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6371217 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 6371174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 15205474 - 15205576
Alignment:
Q  96 tatacccttttgcatccggttggca-aagtggtggg-acgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcat 193  Q
    |||||| |||||||||| || |||| || ||||||| |||||| |||||| |  ||||||||||| |||||||||||||||||||||| ||| |||||||    
T  15205474 tataccattttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcat 15205573  T
Q  194 cat 196  Q
    |||    
T  15205574 cat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 36203207 - 36203310
Alignment:
Q  105 ttgcatccggttggca-aagtggtggg-acgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcat 202  Q
    |||||||||||||||| || ||||||| |||||| |||| ||| |||||||||| | |||||||||  |||||||||||||||   ||||| ||||||||    
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  203 cttc 206  Q
    ||||    
T  36203307 cttc 36203310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 49053874 - 49054049
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatata-cccttttgcatccggttggca-aagtggtggga-c 132  Q
    |||||||||||||||||||||||||||||||| ||| ||||   ||||||||||||||| |||| ||||||||||||| ||||| | || |||||||  |    
T  49053874 ttggtgtgaatgtgcaagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggc 49053973  T
Q  133 gaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttctt 208  Q
    |||| |||||||| ||||||||| || ||||||||| ||| |||||||||| |  |||||||||||||||||||||    
T  49053974 gaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttctt 49054049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 49061454 - 49061629
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatat-acccttttgcatccggttggca-aagtggt-gggac 132  Q
    ||||||||||||||||| |||||||||||||||||| |||||  |||||||||||| || ||| |||||||||||||  ||||||| || |||| ||| |    
T  49061454 ttggtgtgaatgtgcaaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggc 49061553  T
Q  133 gaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttctt 208  Q
    |||| |||||||| |  |||||| || ||||||||||||  ||||||||||||  |||||||||||||||||||||    
T  49061554 gaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttctt 49061629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 10917598 - 10917629
Alignment:
Q  39 gtgtgaatgtgcaagtcacgtcaaggattcca 70  Q
    ||||||||||||||||||||||||||||||||    
T  10917598 gtgtgaatgtgcaagtcacgtcaaggattcca 10917629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 42263472 - 42263279
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggca-aagtggt 127  Q
    |||||| || || ||||||||||||||| ||||| ||||  |  ||||   ||||||||||| ||| |||||| ||||||||   |||| || || ||||    
T  42263472 gatacgcttagtatgaatgtgcaagtcatgtcaaagattttaaagtatcctgaaggggattcaccgttataccattttgcattttgttgacataattggt 42263373  T
Q  128 ggga-cgaattgaacctaagggttagtgtgtcacacacacgctttgaaa--tttatgtgcaatcttcatcatgttcatcttcttggtcaagttattg 221  Q
    |||| |||   |||||||| |||||||||||| |||||| |||||||||  | |||||||| ||||| |||   |||||||||| || |||||||||    
T  42263372 gggaacgagccgaacctaaaggttagtgtgtctcacacatgctttgaaagttatatgtgcattcttcttca---tcatcttcttagttaagttattg 42263279  T

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Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 48779905 - 48779724
Alignment:
Q  26 attgatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggca-aagt 124  Q
    ||||||| | ||||||||||||||||||||||||||| |||| ||| ||||   ||||||||||| |||||||||||||||||||||  |||||| || |    
T  48779905 attgatatgcttggtgtgaatgtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatatacccttttgcatccaattggcataact 48779806  T
Q  125 gg-tgggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatctt 205  Q
    ||  | | ||||| |||| ||| ||||||||| || ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  48779805 ggcagaggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctt 48779724  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 24391908 - 24391997
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatat-acccttttgcatccggttgg 118  Q
    |||||| ||||||||| ||||||||||||  |||||||||||| |||| | ||||||||||||||| ||| ||||||||||||||||||||    
T  24391908 gatacgtttggtgtga-tgtgcaagtcacaccaaggattccattgtatcttgaaggggattcgccggtataacccttttgcatccggttgg 24391997  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 20251618 - 20251663
Alignment:
Q  161 acacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  20251618 acacacgctttgaaatttatgtgtactcttcatcatgttcatcttc 20251663  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 3425182 - 3425227
Alignment:
Q  199 tcatcttcttggtcaagttattgcagtaga-ctccaacacaggttc 243  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||    
T  3425182 tcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 18670603 - 18670566
Alignment:
Q  168 ctttgaaatttatgtgcaatcttcatcatgttcatctt 205  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  18670603 ctttgaaatttatgtgcacacttcatcatgttcatctt 18670566  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 47078076 - 47078000
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccg 113  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    ||||||||| | | | |||||||||||||||||    
T  47078076 ttggtgtaaatgtgtaagtcacgtcaaggattccatggtatcctaaaggggatttgtc-aaatacccttttgcatccg 47078000  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 28612181 - 28612016
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggca-aagtggt-gggacg 133  Q
    ||||||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||| |||| ||| | |||| || || |||| ||||      
T  28612181 ttggtgtgaatgtacaagtcacgtcaaggattccattgtattctgaaggggattcgccgatataccattttacatactgttgacataactggtggggaaa 28612082  T
Q  134 aattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcat 202  Q
    ||| |||||||| ||||| |||||  ||||||  |||| |||||||||||||  |||||||||||||||    
T  28612081 aatcgaacctaaaggtta-tgtgttccacaca--ctttaaaatttatgtgcacacttcatcatgttcat 28612016  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 11932035 - 11932225
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatat-acccttttgcatccggttggca-aagtggt-gggac 132  Q
    |||||||||||  ||||||||| ||||||||| ||||||||   ||||||| ||||| | ||| |||||||||||||||||||||| || | || ||| |    
T  11932035 ttggtgtgaataagcaagtcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggc 11932133  T
Q  133 gaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttcttggtcaagttattgcag 224  Q
    ||||  ||||||| ||||||||||||  ||||| ||||||||||||||||||| ||  | || |  ||||||||||  ||||||||||||||    
T  11932134 gaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcactccacttcttcatcatcttcttcatcaagttattgcag 11932225  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 14218928 - 14218750
Alignment:
Q  29 gatacgattggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggca-aagtggt 127  Q
    |||||| ||||||||||||| || |||| ||||  ||||| || |||| | ||||| |||||   ||||||| ||||||||||| |||| || || ||||    
T  14218928 gatacgtttggtgtgaatgtacatgtcaagtcagtgattctatagtatcttgaaggagattcattgatatactcttttgcatccagttgacataactggt 14218829  T
Q  128 gggacgaattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    ||||||||| ||||||||  |||||| ||||  |||||| |||| ||||||||||||| |  |||||||||||| ||||    
T  14218828 gggacgaatcgaacctaaaagttagtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttc 14218750  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 34681039 - 34680955
Alignment:
Q  138 gaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttcttggtcaagttattgc 222  Q
    ||||||||  ||||||||  | |||||| ||||| ||||| ||||||| ||||||||||||||||||||||  ||||||||||||    
T  34681039 gaacctaaaagttagtgtaccccacacatgcttttaaattcatgtgcagtcttcatcatgttcatcttcttaatcaagttattgc 34680955  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 42779917 - 42779878
Alignment:
Q  199 tcatcttcttggtcaagttattgcagtagactccaacaca 238  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  42779917 tcatcttcttggtcaagttattgcagcagaccccaacaca 42779878  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 217830 - 217991
Alignment:
Q  36 ttggtgtgaatgtgcaagtcacgtcaaggattccatcgtatttggaaggggattcgccgatatacccttttgcatccggttggcaaag-tggt-gggacg 133  Q
    |||||||||||||||||||| | ||||||||| |||||||||        ||||||||| |||||||||||| ||| |||||||| || |||| |||  |    
T  217830 ttggtgtgaatgtgcaagtctcttcaaggatttcatcgtatt--------gattcgccggtatacccttttgtatcaggttggcatagctggtgggggag 217921  T
Q  134 aattgaacctaagggttagtgtgtcacacacacgctttgaaatttatgtgcaatcttcatcatgttcatcttc 206  Q
    ||| || ||||| || |||| |||| ||||||  ||||| |||||||||||| | ||||| ||||||||||||    
T  217922 aatcgatcctaaagg-tagtttgtcccacaca--ctttggaatttatgtgcactattcattatgttcatcttc 217991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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