View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7201_low_9 (Length: 237)
Name: NF7201_low_9
Description: NF7201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7201_low_9 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22079751 - 22079972
Alignment:
| Q |
1 |
acgatcaccctgatggaaattagaagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatcagtgatgttgtaaccatcat |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22079751 |
acgatcaacctgatggaaattagaagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatgagtgatgttgtaaccatcat |
22079850 |
T |
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| Q |
101 |
tgatatgtgctttgaaacccacctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22079851 |
tgatatgtgctttgaaacccacctctttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaac |
22079950 |
T |
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| Q |
201 |
agcaattttccacagagatttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
22079951 |
agcaattttccacagagatttg |
22079972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 1522736 - 1522591
Alignment:
| Q |
66 |
aattaattatagatcagtgatgttgtaaccatcattgatatgtgctttgaaacccacctctttgtcacacaacaccatctcaatatgctgtttgttcttt |
165 |
Q |
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|||||| ||||||| |||||||||||||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1522736 |
aattaaatatagattagtgatgttgtaacca-catagttgagtgctttcaaacccacctctttgtcacacaacaccatctcaatatgctgtttcttcttt |
1522638 |
T |
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| Q |
166 |
gaatttgcaacagtccacatgtcaacaactcgaacagcaattttcca |
212 |
Q |
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| T |
1522637 |
gaatttgcaacagtccacatgtcaacaactcgaacaacaattttcca |
1522591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 23700170 - 23700271
Alignment:
| Q |
121 |
acctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagatt |
220 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
23700170 |
acctctttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaactcgaacatcaattttccacagagatt |
23700269 |
T |
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| Q |
221 |
tg |
222 |
Q |
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|| |
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| T |
23700270 |
tg |
23700271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 125005 - 125106
Alignment:
| Q |
120 |
cacctctttgtcacacaacaccatctcaatatgctgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagat |
219 |
Q |
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|||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
125005 |
cacctctttgtcgcaccccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
125104 |
T |
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| Q |
220 |
tt |
221 |
Q |
| |
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|| |
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|
| T |
125105 |
tt |
125106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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