View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7202_high_1 (Length: 481)
Name: NF7202_high_1
Description: NF7202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7202_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Original strand, 2133825 - 2134278
Alignment:
| Q |
13 |
aatatggctcaaaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaag |
112 |
Q |
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| T |
2133825 |
aatatggctcaaaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaag |
2133924 |
T |
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| Q |
113 |
catagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaag |
212 |
Q |
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| T |
2133925 |
catagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaag |
2134024 |
T |
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| Q |
213 |
tgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactct |
312 |
Q |
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| T |
2134025 |
tgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactct |
2134124 |
T |
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| Q |
313 |
tgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgttttgccaaagcacttaatgttgaatgaggccaccc |
412 |
Q |
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| T |
2134125 |
tgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttattcctaataatgtgttttgccaaagcacttaatgttgaatgaggccaccc |
2134224 |
T |
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| Q |
413 |
aagatttaattatcatacctaatatagtactcacaaattttgtgacaatttgat |
466 |
Q |
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| T |
2134225 |
aagatttaattatcatacctaatatagtactcacaaattttgtgacaatttgat |
2134278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 278 - 466
Target Start/End: Complemental strand, 2073286 - 2073096
Alignment:
| Q |
278 |
taccattgaaagaaattggagtagaaaccaactcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgt |
377 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2073286 |
taccattgaaagtaattggagtagaaaccaactcttgtaagtaaaatgtccattgaaattaggattgtgataccatagctggttgttcctaataatgtgt |
2073187 |
T |
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| Q |
378 |
tttgccaaagcacttaatgttgaatgaggccacccaagatttaattatcatacctaatatagtact--cacaaattttgtgacaatttgat |
466 |
Q |
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| T |
2073186 |
tttccgaaagcacttaatgttgaatgagtccacctaagatttaattatcatacctactatagtactcacacaaattttgtgacaatttgat |
2073096 |
T |
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