View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7202_low_2 (Length: 314)
Name: NF7202_low_2
Description: NF7202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7202_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 9369425 - 9369160
Alignment:
| Q |
22 |
ccgtcaagacctctgatataaagaaacacaaaatcaaaactcgttcttgttaggaacggtaattaattaccgtttacctctttttctcaattacattttg |
121 |
Q |
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| T |
9369425 |
ccgtcaagacctctgatataaagaaacacaaaaacaaaactcgttcttgttaggaacggtaattaattaccgtttacctctttttctcaattacattttg |
9369326 |
T |
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| Q |
122 |
ttttgtttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcctataatttgagcatcgttatatataaattgtggtaaact |
221 |
Q |
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| T |
9369325 |
ttttatttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcgtataatttgagcatcgttgtatataaattttggtaaact |
9369226 |
T |
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| Q |
222 |
atcattaactagttttcatgaaaacatttcagttcatctatgagccaattaaattgatcattgtca |
287 |
Q |
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| T |
9369225 |
atcattaactagttttcatgaaaacatttcagttcatctaggagccaattaaattgatcattgtca |
9369160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 11528888 - 11528956
Alignment:
| Q |
119 |
ttgttttgtttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcctataa |
187 |
Q |
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| T |
11528888 |
ttgttttatttctacctatattatgtttgattacactgatagagtatgcaaatcaaactctttctataa |
11528956 |
T |
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