View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7203_high_9 (Length: 285)
Name: NF7203_high_9
Description: NF7203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7203_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 37934998 - 37934748
Alignment:
| Q |
18 |
tgaacctgaaacatcgcaacacaatcacagttcttcatgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37934998 |
tgaacctgaaacatcgcaacataatcacagtacttcatgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtc |
37934899 |
T |
|
| Q |
118 |
ttcactttcatcgagtatcgcagtcattactatatccatattgattcaataacattacttagattgtatgacctttaaggctttatctaacagtagctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37934898 |
ttcactttcatcgagtatcgcagtcattactatatccatattgattcaataacattacttagattgtatgacctttaaggctttatctaacagtagctta |
37934799 |
T |
|
| Q |
218 |
aggttcataaattatattacatctaacaaagacatttcagaaatcaagtca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37934798 |
aggttcataaattatattacatctaacaaagacatttcagaaatcaagtca |
37934748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 844977 - 844841
Alignment:
| Q |
53 |
catgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcactttcatcgagtatcgcagtcattactatat |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||| | |
|
|
| T |
844977 |
catgttacctggttctcctttcttacactatctaataaaggcctaagtagatccgaggaaatgtcttcactttcgtcgagtatcccggtcattactatct |
844878 |
T |
|
| Q |
153 |
ccatattgattcaataacattacttagattgtatgacct |
191 |
Q |
| |
|
|| ||||||||||| ||| ||||| ||| || |||||| |
|
|
| T |
844877 |
cc--attgattcaattacactacttggatggtttgacct |
844841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 10455426 - 10455286
Alignment:
| Q |
53 |
catgttacctggttcttctttcttacactatctaataaaggcctaagtagattcgaggaaatgtcttcactttcatcgagtatcgcagtcattactatat |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
10455426 |
catgttacctggttctcctttcttacactatctagtaaaggcctgactagattcgaggaaacatcttcactttcatcgagtatcccggtcattactattt |
10455327 |
T |
|
| Q |
153 |
ccatattgattcaataacattacttagattgtatgacctttaa |
195 |
Q |
| |
|
|| ||||||||||| ||||||||| ||| || || ||||||| |
|
|
| T |
10455326 |
cc--attgattcaattacattacttggatggtttggcctttaa |
10455286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 844623 - 844577
Alignment:
| Q |
217 |
aaggttcataaattatattacatctaacaaagacatttcagaaatca |
263 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
844623 |
aaggctcataaattgtatttcatctaacaaagacattgcagaaatca |
844577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University