View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7203_low_12 (Length: 256)

Name: NF7203_low_12
Description: NF7203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7203_low_12
NF7203_low_12
[»] chr7 (18 HSPs)
chr7 (8-256)||(6585242-6585488)
chr7 (193-256)||(31971797-31971860)
chr7 (193-256)||(3419061-3419124)
chr7 (193-256)||(5859945-5860008)
chr7 (173-242)||(40726136-40726202)
chr7 (193-256)||(44353226-44353289)
chr7 (203-256)||(10244536-10244589)
chr7 (173-256)||(34391538-34391618)
chr7 (173-256)||(47325530-47325610)
chr7 (173-254)||(35745477-35745555)
chr7 (194-256)||(3419321-3419383)
chr7 (177-256)||(42454383-42454459)
chr7 (193-249)||(37795359-37795415)
chr7 (193-249)||(37795687-37795743)
chr7 (217-256)||(38306616-38306655)
chr7 (168-256)||(48161681-48161765)
chr7 (173-252)||(25161168-25161244)
chr7 (173-248)||(33434476-33434548)
[»] chr1 (10 HSPs)
chr1 (168-256)||(30685564-30685649)
chr1 (168-256)||(40216146-40216231)
chr1 (173-256)||(7002543-7002623)
chr1 (207-256)||(24449606-24449655)
chr1 (173-256)||(27031486-27031566)
chr1 (173-256)||(46814110-46814190)
chr1 (173-256)||(14320679-14320759)
chr1 (204-256)||(6804894-6804945)
chr1 (193-256)||(24684155-24684217)
chr1 (203-256)||(31584712-31584764)
[»] chr8 (16 HSPs)
chr8 (193-256)||(12897938-12898001)
chr8 (174-256)||(32065931-32066010)
chr8 (193-256)||(37986517-37986580)
chr8 (177-256)||(15821026-15821101)
chr8 (173-256)||(22773977-22774057)
chr8 (193-256)||(20138782-20138845)
chr8 (173-253)||(24995040-24995117)
chr8 (173-252)||(31207007-31207083)
chr8 (193-256)||(16457137-16457200)
chr8 (211-256)||(9519862-9519907)
chr8 (193-240)||(9659474-9659521)
chr8 (193-256)||(35815906-35815969)
chr8 (173-256)||(3584093-3584174)
chr8 (211-256)||(27889202-27889247)
chr8 (211-256)||(27947860-27947905)
chr8 (10-54)||(31283470-31283514)
[»] chr3 (17 HSPs)
chr3 (193-256)||(2392165-2392228)
chr3 (193-256)||(2393928-2393991)
chr3 (173-256)||(45164209-45164289)
chr3 (177-256)||(47236054-47236130)
chr3 (177-256)||(50305223-50305299)
chr3 (193-256)||(21343703-21343766)
chr3 (202-256)||(30352110-30352164)
chr3 (203-256)||(37158662-37158715)
chr3 (167-256)||(23327987-23328073)
chr3 (193-256)||(34475420-34475483)
chr3 (173-256)||(17551313-17551393)
chr3 (173-256)||(19176862-19176942)
chr3 (193-256)||(40023231-40023294)
chr3 (193-256)||(43012733-43012795)
chr3 (193-256)||(53248256-53248319)
chr3 (173-256)||(4463730-4463810)
chr3 (173-256)||(45399141-45399221)
[»] chr6 (4 HSPs)
chr6 (173-252)||(3254317-3254393)
chr6 (207-256)||(10542187-10542236)
chr6 (173-256)||(15944355-15944435)
chr6 (224-256)||(33697790-33697822)
[»] chr4 (12 HSPs)
chr4 (177-256)||(2826137-2826213)
chr4 (168-256)||(46698419-46698504)
chr4 (193-256)||(9750123-9750185)
chr4 (206-256)||(27555606-27555656)
chr4 (173-256)||(7703043-7703122)
chr4 (193-246)||(30167225-30167278)
chr4 (203-256)||(35329363-35329416)
chr4 (173-256)||(35340996-35341078)
chr4 (193-256)||(4306061-4306123)
chr4 (193-256)||(31050323-31050386)
chr4 (219-256)||(49528442-49528479)
chr4 (196-252)||(20464949-20465005)
[»] chr2 (12 HSPs)
chr2 (177-256)||(14436916-14436992)
chr2 (190-256)||(15457818-15457884)
chr2 (193-256)||(3745697-3745760)
chr2 (193-256)||(45311466-45311529)
chr2 (196-256)||(17116553-17116613)
chr2 (193-256)||(387532-387595)
chr2 (190-254)||(7455610-7455673)
chr2 (177-256)||(5254609-5254684)
chr2 (173-256)||(14106168-14106247)
chr2 (183-256)||(22888545-22888617)
chr2 (173-256)||(39338506-39338586)
chr2 (173-256)||(7874632-7874713)
[»] chr5 (5 HSPs)
chr5 (193-256)||(18593598-18593661)
chr5 (216-256)||(29087834-29087874)
chr5 (193-256)||(34378455-34378518)
chr5 (173-256)||(7452944-7453024)
chr5 (195-256)||(18255114-18255175)
[»] scaffold0172 (1 HSPs)
scaffold0172 (193-256)||(19274-19337)
[»] scaffold0434 (1 HSPs)
scaffold0434 (203-256)||(2345-2398)
[»] scaffold0343 (1 HSPs)
scaffold0343 (193-252)||(6065-6124)
[»] scaffold0085 (1 HSPs)
scaffold0085 (173-256)||(48691-48771)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 6585488 - 6585242
Alignment:
Q  8 atatcgtattgaaagatgtctgctctaataccgtttgtaacatcccaatctactttcagagtatgaattttgatatgaattcggttcgcccaaaaacaaa 107  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||| ||    
T  6585488 atatcgtattgaaagaggtatgctctgataccgtttgtaacatcccaacccactttcagagtatgaatttcgatatgaattcggttcgcctaaaaactaa 6585389  T
Q  108 caatagtcgctcatacacttttttgttttaaatggtgaacctctcctattaaattaaaaca-tttcttttaatcagcaaatattaatattaaatgtcatc 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||   ||||||| | ||||    
T  6585388 caatagtcgttcatacacttttttgttttaaatggtgaacctctcctattaaactaaaacatttttttttaatcagcaaatat---tattaaacgccatc 6585292  T
Q  207 cccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  6585291 cccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacata 6585242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 31971797 - 31971860
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  31971797 tattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 31971860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 3419061 - 3419124
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| | |||||||||    
T  3419061 tattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcata 3419124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 5859945 - 5860008
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||    
T  5859945 tattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcata 5860008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 40726136 - 40726202
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagataca 242  Q
    |||||||| ||||||||||   ||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  40726136 ttttaatcggcaaatatta---ttaaatgtcatccccgcaagacgcaaggtatggacgaaacaagataca 40726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 44353226 - 44353289
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||    
T  44353226 tattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcata 44353289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 10244589 - 10244536
Alignment:
Q  203 catccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| |||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  10244589 catctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 10244536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 34391618 - 34391538
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||||   ||||| |||||||||||| || ||| || ||||||| ||||||||||||||  |||||||||    
T  34391618 ttttaatcagcaaatatta---ttaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcata 34391538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 47325530 - 47325610
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| ||||||| || |||| |||||| ||||||| ||||||||||||||||||| |||||    
T  47325530 ttttaatcggcaaatatta---ttaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcata 47325610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 35745477 - 35745555
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgca 254  Q
    |||||||||||||||||||   ||||| |||||| ||| || | |||||| ||||||| |||||||||||||||||| ||||    
T  35745477 ttttaatcagcaaatatta---ttaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 3419321 - 3419383
Alignment:
Q  194 attaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||| | ||||||||||||| |||||| ||||||| ||||||||||||| | |||||||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcata 3419383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 42454383 - 42454459
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   |||||  |||||||||||||| |||||  || |||| |||||| ||||||||||||||||||    
T  42454383 aatcagcaaatatta---ttaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcata 42454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 37795415 - 37795359
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtg 249  Q
    ||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||||    
T  37795415 tattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 37795743 - 37795687
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtg 249  Q
    ||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||||    
T  37795743 tattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 38306655 - 38306616
Alignment:
Q  217 gcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  38306655 gcaaggtatggacgaaacaagatacaaatggtgccgcata 38306616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 48161681 - 48161765
Alignment:
Q  168 atttcttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| |||||||||||||||||   ||||||| |||||||| ||||||  ||||  |||||| |||||| |||||||| ||||||||||    
T  48161681 attttttttaatcagcaaatat---tattaaacgtcatccctgcaagacacaagatatggac-gaacaaaatacaaatagtgccgcata 48161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 25161244 - 25161168
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccg 252  Q
    |||||||| ||||||||||   ||||| |||||||||| |||||  |||| ||| ||| |||||||| ||||||||||||    
T  25161244 ttttaatcggcaaatatta---ttaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccg 25161168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 33434476 - 33434548
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggt 248  Q
    |||||||| ||||||||||   ||||| | ||||||||||| | |||||| ||||||| | |||||||||||||||    
T  33434476 ttttaatcggcaaatatta---ttaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggt 33434548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 30685564 - 30685649
Alignment:
Q  168 atttcttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| |||||||| ||||||||||   ||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  30685564 attttttttaatcggcaaatatta---ttaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 30685649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 40216146 - 40216231
Alignment:
Q  168 atttcttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| |||||||||||||||||||   ||||| ||||||| ||||||| || ||  ||||||| | |||||||||||||||||||||||    
T  40216146 attttttttaatcagcaaatatta---ttaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcata 40216231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7002623 - 7002543
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| ||||||| ||||| ||| |||| ||||||| ||||||||||||| |||||||||||    
T  7002623 ttttaatcggcaaatatta---ttaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcata 7002543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 24449606 - 24449655
Alignment:
Q  207 cccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  24449606 cccgcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcata 24449655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 27031486 - 27031566
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||| |||||||||   ||||| ||||||| ||||||| |||||  ||||||||||||| ||| |||||||||||||||    
T  27031486 ttttaatcatcaaatatta---ttaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcata 27031566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 46814110 - 46814190
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||| ||||||||   ||||| | ||||| ||||||| | |||| ||||||| |||||||||||||||||||||||||    
T  46814110 ttttaatcagtaaatatta---ttaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcata 46814190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 14320759 - 14320679
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| ||||||||| |||||||||||| ||||||  ||| | |||||||||||| ||||||    
T  14320759 ttttaatcggcaaatatta---ttaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcata 14320679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 6804945 - 6804894
Alignment:
Q  204 atccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||| |||||| ||||||| || ||||||||||||||||||||||    
T  6804945 atccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcata 6804894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 24684155 - 24684217
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| |||||||||| ||||||||||||| ||| ||  |||||||||||||||||||| ||||    
T  24684155 tattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacata 24684217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 31584712 - 31584764
Alignment:
Q  203 catccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| ||||||| |||||| ||| ||| |||||||||||||||||||||||||    
T  31584712 catcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcata 31584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 12897938 - 12898001
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  12897938 tattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcata 12898001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 32065931 - 32066010
Alignment:
Q  174 tttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||   ||||| | |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  32065931 tttaatcggcaaatatta---ttaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcata 32066010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 37986517 - 37986580
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| |||||    
T  37986517 tattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcata 37986580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 15821026 - 15821101
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| |||||||  |||||| |||||| |||||||||||||||||||||||||||||||||    
T  15821026 aatcagcaaatatta---ttaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcata 15821101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 22774057 - 22773977
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| | ||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||    
T  22774057 ttttaatcggcaaatatta---ttaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcata 22773977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 20138845 - 20138782
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||    
T  20138845 tattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcata 20138782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 24995040 - 24995117
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgc 253  Q
    |||||||||||||||||||   || || | |||||||| |||| |||||| ||||||| ||||||||||||||||||||||    
T  24995040 ttttaatcagcaaatatta---ttgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgc 24995117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 31207007 - 31207083
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccg 252  Q
    |||||||| ||||||||||   ||||| | ||||| ||||||| |||||| ||||||| |||||||||||||||||||||    
T  31207007 ttttaatcggcaaatatta---ttaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccg 31207083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 16457137 - 16457200
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||||| |||||| | |||| ||||||| |||||||||||||||||||| ||||    
T  16457137 tattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacata 16457200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 9519907 - 9519862
Alignment:
Q  211 caagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||    
T  9519907 caagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 9519862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 9659521 - 9659474
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagata 240  Q
    ||||||| ||||||||||||||| |||||| ||||||| |||||||||    
T  9659521 tattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 35815906 - 35815969
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | ||||| ||||| | |||||| ||||||| |||||||||||||||||||| ||||    
T  35815906 tattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacata 35815969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 3584174 - 3584093
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaa-gatacaaatggtgccgcata 256  Q
    |||||||||||||||||||   ||||| | ||||||| ||||| || ||| ||| ||| ||||| ||||||||||||||||||||    
T  3584174 ttttaatcagcaaatatta---ttaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcata 3584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 27889247 - 27889202
Alignment:
Q  211 caagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| |||||| || |||| |||||||||||||||||||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcata 27889202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 27947905 - 27947860
Alignment:
Q  211 caagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| |||||| || |||| |||||||||||||||||||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcata 27947860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 31283470 - 31283514
Alignment:
Q  10 atcgtattgaaagatgtctgctctaataccgtttgtaacatccca 54  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  31283470 atcgtattggaagaggtctgctctgataccatttgtaacatccca 31283514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 2392165 - 2392228
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  2392165 tattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 2392228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 2393928 - 2393991
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  2393928 tattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 2393991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 45164289 - 45164209
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   |||||  | ||||||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  45164289 ttttaatcggcaaatatta---ttaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcata 45164209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 47236130 - 47236054
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| | |||||| |||||| |||||| ||||||| |||||||||||||||||||||||||    
T  47236130 aatcagcaaatatta---ttaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 47236054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 50305223 - 50305299
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  50305223 aatcagcaaatatta---ttaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcata 50305299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 21343766 - 21343703
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||||| ||||||  ||||| ||||||| |||||||||||||||||||||||||    
T  21343766 tattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcata 21343703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 30352110 - 30352164
Alignment:
Q  202 tcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  30352110 tcattcccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 30352164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 37158715 - 37158662
Alignment:
Q  203 catccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||    
T  37158715 catccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcata 37158662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 23327987 - 23328073
Alignment:
Q  167 catttcttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| |||||||||||||||||||   ||||| |  ||||| |||| | |||||| ||||||| ||||||||| |||||||||||||||    
T  23327987 cattttttttaatcagcaaatatta---ttaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcata 23328073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 34475420 - 34475483
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| ||| || ||| ||| |||||||||||||||||||| ||||    
T  34475420 tattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccata 34475483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 17551393 - 17551313
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||| ||||||||   ||||| || ||||| |||||||||| || ||| ||| ||||| |||||||||||||||||||    
T  17551393 ttttaatcagtaaatatta---ttaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcata 17551313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 19176942 - 19176862
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| ||||| || |||||| |||| | ||||||| |||| ||||||||||||||||||||    
T  19176942 ttttaatcggcaaatatta---ttaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcata 19176862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 40023231 - 40023294
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||  |||||||||||||| |||  | ||||||| ||||||||||||||| |||||||||    
T  40023231 tattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcata 40023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 43012795 - 43012733
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||  |||||| |||||| ||| ||| ||||| |||||||||||||||||||    
T  43012795 tattaaatgtcatcct-gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcata 43012733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 53248319 - 53248256
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||  | |||| ||||||  |||||||||||||||||| ||||||    
T  53248319 tattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcata 53248256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 4463730 - 4463810
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| |||| |||| ||||| |||||  ||||||| ||||| | |||||||||||||||||    
T  4463730 ttttaatcggcaaatatta---ttaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcata 4463810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 45399221 - 45399141
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||||   ||||| | |||| ||| |||| || ||| ||| ||| ||||||||||||| |||||||||||    
T  45399221 ttttaatcagcaaatatta---ttaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcata 45399141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 3254393 - 3254317
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccg 252  Q
    |||||||| ||||||||||   ||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  3254393 ttttaatcggcaaatatta---ttaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccg 3254317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 10542236 - 10542187
Alignment:
Q  207 cccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||  ||| ||| ||||||||||||| |||||||||||    
T  10542236 cccgcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcata 10542187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 15944435 - 15944355
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| | |||||| | |||| |||||| |||||| ||| ||||||||||||||| ||||||    
T  15944435 ttttaatcggcaaatatta---ttaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcata 15944355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 33697790 - 33697822
Alignment:
Q  224 atggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||||||||||||||||||||||    
T  33697790 atggacgaaacaagatacaaatggtgccgcata 33697822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 2826213 - 2826137
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||||||    
T  2826213 aatcagcaaatatta---ttaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcata 2826137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 46698419 - 46698504
Alignment:
Q  168 atttcttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| |||||||||||||||||||   ||||| |||||||  | |||| |||||| |||| || |||||||||||||||||||||||||    
T  46698419 attttttttaatcagcaaatatta---ttaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcata 46698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 9750185 - 9750123
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||||||||||| ||| ||  |||||| |||||||||||||||||||||||||    
T  9750185 tattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcata 9750123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 27555606 - 27555656
Alignment:
Q  206 ccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||||||||    
T  27555606 ccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcata 27555656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7703122 - 7703043
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| |||||||||||||||  ||||| ||||| | || ||||||||||||||||||||||    
T  7703122 ttttaatcggcaaatatta---ttaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcata 7703043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 30167225 - 30167278
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatg 246  Q
    ||||||| ||||||| ||||||| |||||| ||||||| |||||||||||||||    
T  30167225 tattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatg 30167278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 35329416 - 35329363
Alignment:
Q  203 catccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||| |||||    
T  35329416 catccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcata 35329363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 35340996 - 35341078
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatcccc--gcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||| |||||||||   ||||| |||||||||  |||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  35340996 ttttaatcaacaaatatta---ttaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacata 35341078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 4306123 - 4306061
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||| |||| |||||| ||| || ||| |||||| |||||||||||||||    
T  4306123 tattaaatgtcatccccggaagacgcaaggtatgaac-gaaaaagatataaatggtgccgcata 4306061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 31050323 - 31050386
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||| |||||||||||||| | | ||||||| ||||||||||||||| || ||||||    
T  31050323 tattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcata 31050386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 49528479 - 49528442
Alignment:
Q  219 aaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  49528479 aaggtatggacgaaacaagatacaaatggtgccgcata 49528442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 20465005 - 20464949
Alignment:
Q  196 taaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccg 252  Q
    |||| ||||||| | |||||||||||| ||| | | |||||||||||||||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccg 20464949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 14436916 - 14436992
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| | ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  14436916 aatcagcaaatatta---ttaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcata 14436992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 15457884 - 15457818
Alignment:
Q  190 taatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||| ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||    
T  15457884 taatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcata 15457818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 3745760 - 3745697
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||  |||| |||||| ||||||| ||||||||||||||||||| |||||    
T  3745760 tattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcata 3745697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 45311466 - 45311529
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | || ||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  45311466 tattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacata 45311529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 17116553 - 17116613
Alignment:
Q  196 taaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||| ||||||||||||||| |||||| |||||||  |||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcata 17116613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 387595 - 387532
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||| |||||||  ||| || ||||||| |||||||||||||||||||||||||    
T  387595 tattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcata 387532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 7455673 - 7455610
Alignment:
Q  190 taatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgca 254  Q
    |||||||||| ||||||||||||||| || ||| ||| ||| || ||||||||||||||||||||    
T  7455673 taatattaaacgtcatccccgcaagacgc-aggtatgaacgaaataagatacaaatggtgccgca 7455610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 5254684 - 5254609
Alignment:
Q  177 aatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||   ||||| ||||||| ||||||| | |||| ||||||| || | ||||||||||||||||||||    
T  5254684 aatcagcaaatatta---ttaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcata 5254609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 14106168 - 14106247
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||||||||||||||   ||||| | ||||| ||||||| ||| || ||| ||| ||||||||| |||||||||||||||    
T  14106168 ttttaatcagcaaatatta---ttaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcata 14106247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 22888545 - 22888617
Alignment:
Q  183 caaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||| ||||||||||||| ||||||||| |||| | ||||| | |||||| || |||||||||| ||||    
T  22888545 caaatattattattaaatgtcat-cccgcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacata 22888617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 39338506 - 39338586
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   ||||| | ||||  || |||| |||| | ||||||| |||||||||||||||||||||||||    
T  39338506 ttttaatcggcaaatatta---ttaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcata 39338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7874713 - 7874632
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||||||||||||||| ||  ||| | ||||| |||||||  ||||| || |||  |||||||||||||||| ||||||||    
T  7874713 ttttaatcagcaaatattatta--aaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcata 7874632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 18593661 - 18593598
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  18593661 tattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcata 18593598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 29087874 - 29087834
Alignment:
Q  216 tgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  29087874 tgcaaggtatggacgaaacaagatacaaatggtgccgcata 29087834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 34378518 - 34378455
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| | |||| |||||||| |||||| |||||||  || |||||||||||||||||||||    
T  34378518 tattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcata 34378455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7453024 - 7452944
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   |||||  ||||||  |||||| |||||| ||||||  | |||||||||||||||||||||||    
T  7453024 ttttaatcggcaaatatta---ttaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcata 7452944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 18255114 - 18255175
Alignment:
Q  195 ttaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||| || ||||||| |||||||| || || |||| |||||||||||||| ||||||||||    
T  18255114 ttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcata 18255175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 19337 - 19274
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||||| ||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  19337 tattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcata 19274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 2345 - 2398
Alignment:
Q  203 catccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    ||||||| ||||| |||||| ||||||| ||||||||||| |||||||||||||    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcata 2398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 6124 - 6065
Alignment:
Q  193 tattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccg 252  Q
    ||||||| ||||||||||||||| |||||  ||| |||  ||||||||||||||||||||    
T  6124 tattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccg 6065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 48771 - 48691
Alignment:
Q  173 ttttaatcagcaaatattaatattaaatgtcatccccgcaagatgcaaggaatggacggaacaagatacaaatggtgccgcata 256  Q
    |||||||| ||||||||||   || || ||| |||||||||||  ||||  ||||||  |||||||||||||||||||||||||    
T  48771 ttttaatccgcaaatatta---ttcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcata 48691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University