View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7203_low_4 (Length: 386)

Name: NF7203_low_4
Description: NF7203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7203_low_4
NF7203_low_4
[»] chr2 (11 HSPs)
chr2 (17-374)||(29507064-29507421)
chr2 (46-374)||(29518030-29518359)
chr2 (46-373)||(29510914-29511240)
chr2 (146-374)||(29535267-29535495)
chr2 (154-348)||(29549036-29549230)
chr2 (149-339)||(29541430-29541620)
chr2 (154-323)||(29490449-29490618)
chr2 (154-336)||(29488339-29488521)
chr2 (206-339)||(29505433-29505566)
chr2 (154-323)||(30256551-30256720)
chr2 (167-335)||(29502538-29502706)
[»] chr4 (1 HSPs)
chr4 (155-334)||(51266291-51266470)
[»] chr8 (1 HSPs)
chr8 (171-335)||(18874593-18874757)
[»] scaffold0186 (1 HSPs)
scaffold0186 (236-335)||(9161-9260)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 29507064 - 29507421
Alignment:
Q  17 acttcatagatctatttgacagagaattgaaactttcatcaacaagaggcaaaagggtcaacaaaaccatgataaacaaactataaccaacaaacaatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507064 acttcatagatctatttgacagagaattgaaactttcatcaacaagaggcaaaagggtcaacaaaaccatgataaacaaactataaccaacaaacaatca 29507163  T
Q  117 catgcaatgatgaatcatagaaaagggtaaatttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507164 catgcaatgatgaatcatagaaaagggtaaatttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaagg 29507263  T
Q  217 caagaaaggagatttctcattccaaacctcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttc 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507264 caagaaaggagatttatcattccaaacctcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttc 29507363  T
Q  317 ttgtgaacagggttcatttgtagcaacaaagggcttttattgcttaagtcttcttctc 374  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29507364 ttgtgaacagggttcatttgtagcaacaaagggcttttgttgcttaagtcttcttctc 29507421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 46 - 374
Target Start/End: Original strand, 29518030 - 29518359
Alignment:
Q  46 aaactttcatcaacaagaggcaaaagggtcaacaaaacca-tgataaacaaactataaccaacaaacaatcacatgcaatgatgaatcatagaaaagggt 144  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  29518030 aaactttcatcaacaagggacaaaagggtcaacaaaaccaatgataaacaaattctaaccaacaaacaatcacatgcaatgatgaatcatagaaaagggt 29518129  T
Q  145 aaatttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacc 244  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  29518130 aaattaatataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacc 29518229  T
Q  245 tcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaaca 344  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  29518230 tcatcaatatactgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaaca 29518329  T
Q  345 aagggcttttattgcttaagtcttcttctc 374  Q
    |||||||||| || ||||| ||||||||||    
T  29518330 aagggcttttgttccttaaatcttcttctc 29518359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 29510914 - 29511240
Alignment:
Q  46 aaactttcatcaacaagaggcaaaagggtcaacaaaacca-tgataaacaaactataaccaacaaacaatcacatgcaatgatgaatcatagaaaagggt 144  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||| |||| |  || | || | | |||||||||||||||||||||||||||||||    
T  29510914 aaactttcatcaacaagggacaaaagggtcaacaaaaccaatgataaataaacaa--acaatcacatattcacatgcaatgatgaatcatagaaaagggt 29511011  T
Q  145 aaatttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacc 244  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||     
T  29511012 aaattaatataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaact 29511111  T
Q  245 tcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaaca 344  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||    
T  29511112 tcatcaatatattgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcatttgtaacaaca 29511211  T
Q  345 aagggcttttattgcttaagtcttcttct 373  Q
    ||||||| || || ||||| |||||||||    
T  29511212 aagggctcttgttccttaaatcttcttct 29511240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 146 - 374
Target Start/End: Original strand, 29535267 - 29535495
Alignment:
Q  146 aatttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacct 245  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  29535267 aatttatataccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacct 29535366  T
Q  246 catcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaacaa 345  Q
    |||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  29535367 catcaatatactgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcatttgtaacaacaa 29535466  T
Q  346 agggcttttattgcttaagtcttcttctc 374  Q
    ||||||||| |||||||||||||||||||    
T  29535467 agggcttttgttgcttaagtcttcttctc 29535495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 154 - 348
Target Start/End: Original strand, 29549036 - 29549230
Alignment:
Q  154 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaata 253  Q
    ||||||||||||||||||||||||||| |||  |||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29549036 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29549135  T
Q  254 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaacaaagg 348  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  29549136 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcatttctagcaacaaagg 29549230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 149 - 339
Target Start/End: Original strand, 29541430 - 29541620
Alignment:
Q  149 ttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcat 248  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| || |||||||||||||| ||||||||| | || |||||||||||||    
T  29541430 ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcat 29541529  T
Q  249 caatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtag 339  Q
    ||||||| | ||||   |  |  || |||||||  ||||| ||||| || || ||||| ||||||||||||||||| ||||||||||||||    
T  29541530 caatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgtgaaccgggttcatttgtag 29541620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 323
Target Start/End: Complemental strand, 29490618 - 29490449
Alignment:
Q  154 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaata 253  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||| ||| |||| ||| ||||||||||||||||| |||    
T  29490618 tacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 29490519  T
Q  254 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaa 323  Q
    || || |||  |||    ||||||||||| ||||| ||||||||||| ||||| || |||||||| ||||    
T  29490518 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 29490449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 336
Target Start/End: Complemental strand, 29488521 - 29488339
Alignment:
Q  154 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaata 253  Q
    |||||| || ||| |||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||| ||| | || ||| ||||||||||| ||||| ||     
T  29488521 tacctttttgtcactataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatgaagctttatcattccaaacttcatctatg 29488422  T
Q  254 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttg 336  Q
    ||||| |||  ||||  |||||||||||  | ||| |||||||| || ||||| || || || |||||||  |||||||||||    
T  29488421 tattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttgttgtgaattgggttcatttg 29488339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 29505433 - 29505566
Alignment:
Q  206 ggatcagaaggcaagaaaggagatttctcattccaaacctcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaa 305  Q
    |||||||||||||| |||||||| |  ||||||||||||||||||||||||| ||||  | |||  || |||||||  | ||| |||||||| || ||||    
T  29505433 ggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaatatttagtgactcacaaatggatttgccattatggattagaa 29505532  T
Q  306 cagggattttcttgtgaacagggttcatttgtag 339  Q
    | || |||||||||||||  || |||||||||||    
T  29505533 ctggaattttcttgtgaattggattcatttgtag 29505566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 323
Target Start/End: Original strand, 30256551 - 30256720
Alignment:
Q  154 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaata 253  Q
    |||||| || ||| |||| ||| |||| ||||||||||| ||||||| ||| || | ||||| || ||| | || ||| ||||||||||| ||||| ||     
T  30256551 tacctttttgtcactatactcaacccaaaatctagcttgagctttctcataagggtgagaagacatgaatgaagctttatcattccaaacttcatctatg 30256650  T
Q  254 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaa 323  Q
    ||||| |||  ||||  |||||||||||  | ||| |||||||| || ||||| || || ||||||||||    
T  30256651 tattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaa 30256720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 29502706 - 29502538
Alignment:
Q  167 atataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaatatattgaacagcaa 266  Q
    |||||||||  ||| ||||||||||| ||| ||| ||| |||||||| |||| ||| | || ||| ||||||||||| ||||| || || || |||   |    
T  29502706 atataatcaaaccaaaatctagcttgagctctctcatacggatcagagggcatgaatgaagctttatcattccaaacttcatctatgtactgcacaatga 29502607  T
Q  267 ttaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcattt 335  Q
    ||  |||||||||||  | ||| |||||||| || ||||| || || ||||||||||  ||||||||||    
T  29502606 ttgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcattt 29502538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 334
Target Start/End: Original strand, 51266291 - 51266470
Alignment:
Q  155 accttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttctcattccaaacctcatcaatat 254  Q
    ||||| ||||||| | |||||||||| ||||||||||| ||| |||||| |||||| |  ||||  || |||| ||  || ||||| ||||||||||| |    
T  51266291 accttattatcaacaaaatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgt 51266390  T
Q  255 attgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatt 334  Q
    ||| ||||  ||| || ||||||||||  || || ||||||||||| || || || | ||| |||||||| || ||||||    
T  51266391 attcaacaataatcaaggattcacaaatgggcttcccattatgaataaggactggaacttttttgtgaactggattcatt 51266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 335
Target Start/End: Original strand, 18874593 - 18874757
Alignment:
Q  171 aatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagat-ttctcattccaaacctcatcaatatattgaacagcaatta 269  Q
    |||||||||| ||||| ||||| ||||||||||| ||||| || || | |||| | ||  || || |||||||||||||||||||||| ||||  ||| |    
T  18874593 aatcagcccaaaatcttgcttgagctttctgataaggatctgagggta-gaaatgggaccttatccttccaaacctcatcaatatattcaacaataatga 18874691  T
Q  270 aagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcattt 335  Q
      || ||| ||| |||||| || ||||| || |||||||| || ||||||||||  ||||||||||    
T  18874692 tggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcattt 18874757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 9161 - 9260
Alignment:
Q  236 ttccaaacctcatcaatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcattt 335  Q
    |||||||||||||||||||||| ||||  ||| |  || ||| ||| |||||| || ||||| || |||||||| || ||||||||||  ||||||||||    
T  9161 ttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcattt 9260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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