View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7203_low_5 (Length: 360)
Name: NF7203_low_5
Description: NF7203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7203_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 45791414 - 45791061
Alignment:
| Q |
7 |
tagattatactgattcacaaatacaggtattaatagtgggggaaatttaatcctcaagacgcactgtgttttgattatgtgtgtaaataaatcctttgga |
106 |
Q |
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| T |
45791414 |
tagattattctgattcacaaatacaggtattaatagtgggggaaatttaatcctcaagacgcactgtgttttgattatgtgtgtaaataaatcctttgga |
45791315 |
T |
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| Q |
107 |
atcttaaataaattaaaaatagatgcaaccttgacagtagaaagaacaagattggcatgtttttcctgccactcagttaaatcctgcctaatattagaaa |
206 |
Q |
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| T |
45791314 |
atcttaaataaattaaaaatagatgcaaccttgacagtagaaagaacaagattggcatgtttttcctgccactcagttaaatcctgcctaatattagaaa |
45791215 |
T |
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| Q |
207 |
ctgcgggaacatcaaacagttctgtatcatctgcaaatggtaaccaaaattgatataagcttcaggtataaaataataaagggaagcaacaactgataat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45791214 |
ctgcgggaacatcaaacagttctgtatcatctgcaaatggtaaccaaaattgatataagcttcaggtataaaataataaagggaagcaacaactgataat |
45791115 |
T |
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| Q |
307 |
acaaacttcaaacttcatagcaatatagcatttatactaaagtacaagcatttg |
360 |
Q |
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| T |
45791114 |
acaaacttcaaacttcatagcaatatagcatttatactaaagtacaagcatttg |
45791061 |
T |
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