View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7203_low_7 (Length: 348)
Name: NF7203_low_7
Description: NF7203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7203_low_7 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 37602284 - 37602079
Alignment:
| Q |
121 |
ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc |
220 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
37602284 |
ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc |
37602187 |
T |
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| Q |
221 |
caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct |
320 |
Q |
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|||| |||||||||||||| || |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37602186 |
caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct |
37602088 |
T |
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| Q |
321 |
actcattta |
329 |
Q |
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| T |
37602087 |
attcattta |
37602079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 46558707 - 46558912
Alignment:
| Q |
121 |
ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc |
220 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
46558707 |
ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc |
46558804 |
T |
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| Q |
221 |
caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct |
320 |
Q |
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| T |
46558805 |
caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct |
46558903 |
T |
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| Q |
321 |
actcattta |
329 |
Q |
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| T |
46558904 |
attcattta |
46558912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 22778820 - 22778747
Alignment:
| Q |
121 |
ctgaaaaagattt-gatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagta |
193 |
Q |
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| T |
22778820 |
ctgaaaaagattttgatcacttgatggcatgacgatagtcacatagccataggccatgcatttgatttgaagta |
22778747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 22778728 - 22778644
Alignment:
| Q |
245 |
tgtaaagtagtggg-tttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcctactcattta |
329 |
Q |
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| T |
22778728 |
tgtaaagtagtggggtttgatg-cattattcacgtgtagaacttgcagccatattttgatgtaagtagttgatgcctattcattta |
22778644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16829 - 16868
Alignment:
| Q |
7 |
gtgtaatgtccgtttcgaattatttaattgagtctagaag |
46 |
Q |
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| T |
16829 |
gtgtaacgcccgtttcgaattatttaattgagtctagaag |
16868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 27846676 - 27846704
Alignment:
| Q |
16 |
ccgtttcgaattatttaattgagtctaga |
44 |
Q |
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| T |
27846676 |
ccgtttcgaattatttaattgagtctaga |
27846704 |
T |
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