View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7204_high_1 (Length: 477)
Name: NF7204_high_1
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7204_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 43089450 - 43089001
Alignment:
| Q |
18 |
agctagaagatccacggtaaaatacataaacagatctcatattctaattcctagtatcacttgaatatttacatttcttatgatttttattttgcaggaa |
117 |
Q |
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| T |
43089450 |
agctagaagatccacggtaaaatacataaacagatctcatattttaattcctagtatcacttgaatatttacatttcttatgattgttattttgcaggaa |
43089351 |
T |
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| Q |
118 |
aggtacaatcacaatgagagtaacaggaacgagtttacagcttcaattcctattcacagcagaagattatcatcatcttttgatgctacaatgaacagtt |
217 |
Q |
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| T |
43089350 |
aggtataatcacaatgagagtaacaggaacgagtacacagcttcaattcctattcacagcagaagattatcatcatcttttgatgctacaatgaacagtt |
43089251 |
T |
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| Q |
218 |
atgatattggaagtccaaaaatagtagaagttgatactggaagaccaaaatcaaggtctagaagaagcaatacatcaatttcagattttggagatgaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43089250 |
atgatattggaagtccaaaaatagtagaagttgatactggaagaccaaaatcaaggtctagaagaagcaatacatcaatttcagattttggagatgaccc |
43089151 |
T |
|
| Q |
318 |
ttcatttcaaacactttcttctccacttcaagttactccatctcagttatacattccaaatcaaagaaattataacgaatcagattggggaataacaggt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43089150 |
ttcatttcaaacactttcttctccacttcaagttactccatctcagttatacattccaaatcaaagaaattataacgaatcagattggggaataacaggt |
43089051 |
T |
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| Q |
418 |
gaagaatgcagattttcaactgcacagagcactccacgtttcacaggttc |
467 |
Q |
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| T |
43089050 |
gaagaatgcagattttcaactgcacagagcactccacgtttcacaagttc |
43089001 |
T |
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