View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7204_high_9 (Length: 212)
Name: NF7204_high_9
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7204_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31309377 - 31309588
Alignment:
| Q |
1 |
tgttaattgttttaatcttcctgggttacctacacgacatgataacgttgatattgtagttattagggagaatactgaaggggagtatgctggtcttgaa |
100 |
Q |
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| T |
31309377 |
tgttaattgttttaatcttcctgggttacctacacgacatgataacgttgatattgtagttattagggagaatactgaaggggagtatgctggtcttgaa |
31309476 |
T |
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| Q |
101 |
catgaggttgttcccggtgtcgtcgaaagtcttaaggtataaataattcctatcatttctttgttttatattgattgaggagaaatacatggtttttgat |
200 |
Q |
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| T |
31309477 |
catgaggttgttcccggtgtcgtcgaaagtcttaaggtataaataattcctatcatttctttgttttatattgattgaggagaaatacatggtttttgat |
31309576 |
T |
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| Q |
201 |
agaccttttgat |
212 |
Q |
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| T |
31309577 |
agaccttttgat |
31309588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 9434373 - 9434271
Alignment:
| Q |
38 |
catgataacgttgatattgtagttattagggagaatactgaaggggagtatgctggtcttgaacatgaggttgttcccggtgtcgtcgaaagtcttaagg |
137 |
Q |
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| T |
9434373 |
catgataatgttgatattgttgttattagggagaatactgaaggggaatatgccggtcttgaacatgaggttgttcccggcgtcgttgagagtctcaagg |
9434274 |
T |
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| Q |
138 |
tat |
140 |
Q |
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| T |
9434273 |
tat |
9434271 |
T |
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