View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7204_low_3 (Length: 412)

Name: NF7204_low_3
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7204_low_3
NF7204_low_3
[»] chr1 (2 HSPs)
chr1 (11-403)||(523516-523908)
chr1 (243-301)||(37087224-37087282)
[»] chr2 (2 HSPs)
chr2 (241-310)||(28635647-28635716)
chr2 (248-336)||(34033132-34033219)
[»] chr3 (3 HSPs)
chr3 (248-331)||(39358556-39358639)
chr3 (154-228)||(41599661-41599735)
chr3 (275-308)||(26159554-26159587)
[»] chr5 (1 HSPs)
chr5 (241-304)||(6827328-6827391)
[»] chr4 (1 HSPs)
chr4 (248-303)||(39279608-39279663)
[»] chr7 (1 HSPs)
chr7 (248-293)||(28081979-28082024)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 523516 - 523908
Alignment:
Q  11 ttattctcttaaatttcaaaagctagtaagacaaacgtttagaagcacttatcacgaaccctttgttagtctcagtctcccaacaactttaacctgttct 110  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  523516 ttattctattaaatttcaaaagttagtaagacaaacgtttagaagcacttatcacgaaccctttgttagtctcagtctccctacaactttaacttgttct 523615  T
Q  111 tcttttgtcttggtaccatcaattgaaattgtcgatttgcatttccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaa 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523616 tcttttgtcttggtaccaccaattgaaattgtcgatttgcatttccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaa 523715  T
Q  211 aaattacatagcttgttgagtcaaag-agcgacaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccacc 309  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  523716 aaattacatagcttgttgagtcaaagtagcgacaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagttagagtctgccacc 523815  T
Q  310 ataatagaactaccaaaagcctcatgaactaaaacttatacacatgattttccaaaggaagtgaatatgtcactacttcctcttgatgtccatc 403  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  523816 ataatagaactacc-aaagcctcatgaactagaacttatatacatgattttccaaaggaagtgaatatgtcattacttcctcttaatgttcatc 523908  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 37087224 - 37087282
Alignment:
Q  243 aagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagt 301  Q
    |||| ||||||||||||||||   ||||| |||||||||||| |||||||||| |||||    
T  37087224 aagtcctaaaacttgcatatcatgaataacatttgcactaaaatttgacaagttagagt 37087282  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 28635716 - 28635647
Alignment:
Q  241 acaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccacca 310  Q
    |||||| ||||||||||||||||   ||||| ||||||||||||||||||||| | ||||||||||||||    
T  28635716 acaagtcctaaaacttgcatatcatgaataacatttgcactaaagtttgacaaattagagtctgccacca 28635647  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 336
Target Start/End: Complemental strand, 34033219 - 34033132
Alignment:
Q  248 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccaccataatagaactaccaaaagcctcatga 336  Q
    |||||||||| || |||| ||||| ||||||||| ||||||||||||| ||||| || | | || || | ||||||||||| |||||||    
T  34033219 ctaaaacttg-atgtcgcgaataacatttgcactgaagtttgacaagttagagtatgtcgctatcatggcactaccaaaaggctcatga 34033132  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 39358639 - 39358556
Alignment:
Q  248 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccaccataatagaactaccaaaagcct 331  Q
    |||||||||||||||||  ||||| ||||||| | || |||||||||| ||||||||||||| | | ||  |||||||||||||    
T  39358639 ctaaaacttgcatatcgtgaataacatttgcattgaaatttgacaagttagagtctgccaccgttaaaggtctaccaaaagcct 39358556  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 41599661 - 41599735
Alignment:
Q  154 tccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaaaaattacatagcttgttg 228  Q
    |||| |||||||||||  ||| ||||| ||||||||||| |   || |||||| |||||||||||||||||||||    
T  41599661 tccaactaaatcaacattctcatcattttgagtcatgttagaccaggattcacacaaaaattacatagcttgttg 41599735  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 26159554 - 26159587
Alignment:
Q  275 ttgcactaaagtttgacaagtaagagtctgccac 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  26159554 ttgcactaaagtttgacaagttagagtctgccac 26159587  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 6827391 - 6827328
Alignment:
Q  241 acaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctg 304  Q
    |||||| ||||||||||||| ||   ||||| |||| |||||||||||||||||| ||||||||    
T  6827391 acaagtcctaaaacttgcatgtcatgaataacattttcactaaagtttgacaagttagagtctg 6827328  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 39279608 - 39279663
Alignment:
Q  248 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtct 303  Q
    ||||||||||||| ||   ||||| ||||||||||||||||||||||| |||||||    
T  39279608 ctaaaacttgcatgtcatgaataatatttgcactaaagtttgacaagttagagtct 39279663  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 28082024 - 28081979
Alignment:
Q  248 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaa 293  Q
    ||||||||||||||||| |||||| ||||||| |||| ||||||||    
T  28082024 ctaaaacttgcatatcgtaaataacatttgcattaaaatttgacaa 28081979  T

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