View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7204_low_4 (Length: 411)
Name: NF7204_low_4
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7204_low_4 |
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| [»] scaffold0224 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 140 - 411
Target Start/End: Original strand, 5266 - 5543
Alignment:
| Q |
140 |
ggtcgacaagaatagtatagaatctactttgacagaattgaagagtacaattaatctggcaagcagaggcatcaaacactgaggaaccgggcctagccaa |
239 |
Q |
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| T |
5266 |
ggtcgacaagaatagtatagaatctactttgacagaattgaagagtacaattaatctggcaagcagaggcatcaaacactgaggaaccgggcctagccaa |
5365 |
T |
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| Q |
240 |
caccttacatgtcaaatgattgaatatttcttgtattattttattcta------tctctttctcacatcttttatttcattttcacctatgttactgcag |
333 |
Q |
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| T |
5366 |
caccttgcatgtcaaatgattgaatatttcttgtattattttattctatctctctctctctctcacatcttttatttcattttcacctatgttactgcag |
5465 |
T |
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| Q |
334 |
gttataactctgcatcagccgaaagcatccccagtttccttaacaaaacattgcttgcttcacagaattgtttgctac |
411 |
Q |
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| T |
5466 |
gttataactctgcatcagccgaaagcatccccagtttccttaacaaaacattgcttgcttcacagaattgtttgctac |
5543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5138 - 5230
Alignment:
| Q |
1 |
agatatattacagttttcaccataagggaaagaaagaaactgagaagaatcatgaagaaatttagatggaaagtgaatacacattcatctttt |
93 |
Q |
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| T |
5138 |
agatatattacagttttcaccataagggaaagaaagaaactgagaagaatcatgaagaaatttagatggaaagtgaatacacattcatctttt |
5230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 140 - 411
Target Start/End: Original strand, 42901293 - 42901570
Alignment:
| Q |
140 |
ggtcgacaagaatagtatagaatctactttgacagaattgaagagtacaattaatctggcaagcagaggcatcaaacactgaggaaccgggcctagccaa |
239 |
Q |
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| T |
42901293 |
ggtcgacaagaatagtatagaatctactttgacagaattgaagagtacaattaatctggcaagcagaggcatcaaacactgaggaaccgggcctagccaa |
42901392 |
T |
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| Q |
240 |
caccttacatgtcaaatgattgaatatttcttgtattattttattcta------tctctttctcacatcttttatttcattttcacctatgttactgcag |
333 |
Q |
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| T |
42901393 |
caccttgcatgtcaaatgattgaatatttcttgtattattttattctatctctctctctctctcacatcttttatttcattttcacctatgttactgcag |
42901492 |
T |
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| Q |
334 |
gttataactctgcatcagccgaaagcatccccagtttccttaacaaaacattgcttgcttcacagaattgtttgctac |
411 |
Q |
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| T |
42901493 |
gttataactctgcatcagccgaaagcatccccagtttccttaacaaaacattgcttgcttcacagaattgtttgctac |
42901570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42901165 - 42901257
Alignment:
| Q |
1 |
agatatattacagttttcaccataagggaaagaaagaaactgagaagaatcatgaagaaatttagatggaaagtgaatacacattcatctttt |
93 |
Q |
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| T |
42901165 |
agatatattacagttttcaccataagggaaagaaagaaactgagaagaatcatgaagaaatttagatggaaagtgaatacacattcatctttt |
42901257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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