View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7204_low_6 (Length: 380)
Name: NF7204_low_6
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7204_low_6 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 5643 - 5772
Alignment:
| Q |
16 |
aatgaattctagttttaaacacatttgatatcttatctaacttgaga--gtcttgacatagactaaatatcattctttcgtgtggaactgcatataaata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5643 |
aatgaattctagttttaaacacatttgatatcttatctaacttgagagagtcttgacatagactaaatatcattagttcgtgtggaactgcatataaata |
5742 |
T |
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| Q |
114 |
atacttcgagtcgagtaaaactatagaaaa |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5743 |
atacttcgagtcgagtaaaactatagaaaa |
5772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 5823 - 5903
Alignment:
| Q |
290 |
atattggattttatacttgttatagttgtctctaaagaatctaaaaa----atacataatg-aaaaaagtctagttaaata |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
5823 |
atattggattttatacttgttatagttgtctctaaagaatctcaaaaatacatacataatgaaaaaaagtctagttaaata |
5903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 42901670 - 42901799
Alignment:
| Q |
16 |
aatgaattctagttttaaacacatttgatatcttatctaacttgaga--gtcttgacatagactaaatatcattctttcgtgtggaactgcatataaata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42901670 |
aatgaattctagttttaaacacatttgatatcttatctaacttgagagagtcttgacatagactaaatatcattagttcgtgtggaactgcatataaata |
42901769 |
T |
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| Q |
114 |
atacttcgagtcgagtaaaactatagaaaa |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42901770 |
atacttcgagtcgagtaaaactatagaaaa |
42901799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 42901850 - 42901930
Alignment:
| Q |
290 |
atattggattttatacttgttatagttgtctctaaagaatctaaaaa----atacataatg-aaaaaagtctagttaaata |
365 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
42901850 |
atattggattttatacttgttatagttgtctctaaagaatctcaaaaatacatacataatgaaaaaaagtctagttaaata |
42901930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 16836128 - 16836176
Alignment:
| Q |
236 |
tatgagagaaaaagttgttacaaatttatggtagaaatatcatttctca |
284 |
Q |
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|||||||||||||||||| ||||| | || ||| ||||||||||||||| |
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| T |
16836128 |
tatgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctca |
16836176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 37966414 - 37966358
Alignment:
| Q |
236 |
tatgagagaaaaagttgttacaaatttatggtagaaatatcatttctc-aaaactat |
291 |
Q |
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|||||||||||||||||| ||||||| | ||| |||||||||||||| |||||||| |
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| T |
37966414 |
tatgagagaaaaagttgtcacaaattggttgtacaaatatcatttctctaaaactat |
37966358 |
T |
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