View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7204_low_7 (Length: 239)

Name: NF7204_low_7
Description: NF7204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7204_low_7
NF7204_low_7
[»] chr7 (8 HSPs)
chr7 (62-221)||(25024380-25024539)
chr7 (62-208)||(5287865-5288011)
chr7 (1-60)||(25024152-25024211)
chr7 (2-59)||(5287312-5287369)
chr7 (137-221)||(43727868-43727952)
chr7 (140-221)||(9230276-9230357)
chr7 (149-208)||(24276460-24276519)
chr7 (1-60)||(23180265-23180322)
[»] chr8 (12 HSPs)
chr8 (62-208)||(24333511-24333657)
chr8 (2-66)||(23448981-23449045)
chr8 (1-67)||(27190508-27190574)
chr8 (1-66)||(14446562-14446627)
chr8 (1-66)||(28846347-28846412)
chr8 (155-215)||(27190661-27190721)
chr8 (137-215)||(13152619-13152697)
chr8 (137-188)||(9256293-9256344)
chr8 (157-200)||(14446725-14446768)
chr8 (9-60)||(24333291-24333342)
chr8 (1-59)||(30694318-30694376)
chr8 (137-221)||(28846493-28846577)
[»] chr6 (4 HSPs)
chr6 (106-208)||(8035480-8035581)
chr6 (1-62)||(8035794-8035855)
chr6 (1-66)||(25340212-25340277)
chr6 (17-60)||(11970717-11970760)
[»] chr1 (10 HSPs)
chr1 (1-60)||(50682660-50682719)
chr1 (1-66)||(30559385-30559450)
chr1 (137-221)||(14498770-14498854)
chr1 (1-60)||(9636862-9636921)
chr1 (137-208)||(30559237-30559308)
chr1 (1-60)||(25017300-25017359)
chr1 (137-188)||(52754036-52754087)
chr1 (1-59)||(48606991-48607049)
chr1 (137-199)||(9636994-9637056)
chr1 (137-198)||(48606854-48606915)
[»] chr4 (5 HSPs)
chr4 (126-208)||(51379502-51379584)
chr4 (13-73)||(29528232-29528292)
chr4 (1-59)||(17359197-17359255)
chr4 (1-60)||(31944360-31944418)
chr4 (137-200)||(31944488-31944551)
[»] chr2 (5 HSPs)
chr2 (3-60)||(28841156-28841213)
chr2 (1-60)||(12539315-12539374)
chr2 (137-200)||(12539446-12539509)
chr2 (137-200)||(34317707-34317770)
chr2 (1-46)||(34318153-34318198)
[»] chr5 (9 HSPs)
chr5 (1-60)||(27169170-27169229)
chr5 (118-208)||(11852568-11852658)
chr5 (137-198)||(8785655-8785716)
chr5 (63-123)||(11849857-11849917)
chr5 (137-184)||(3055353-3055400)
chr5 (1-60)||(40813582-40813641)
chr5 (28-65)||(11849683-11849720)
chr5 (1-57)||(8785524-8785580)
chr5 (137-200)||(27169035-27169098)
[»] chr3 (5 HSPs)
chr3 (2-59)||(51261732-51261789)
chr3 (137-221)||(51261851-51261935)
chr3 (137-221)||(3857095-3857179)
chr3 (2-56)||(55194791-55194845)
chr3 (8-52)||(3857259-3857303)
[»] scaffold0178 (2 HSPs)
scaffold0178 (137-210)||(17612-17685)
scaffold0178 (6-60)||(17486-17540)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 25024380 - 25024539
Alignment:
Q  62 acaatatatataaaagcagaaatgcactcaaatcacgcatttcattgttaaccagcgttattcattaatgaagttatcttcaacaacagcggatgcacca 161  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25024380 acaatatatataaaagcagaaacgcactcgaatcacgcatctcattgttaaccagcgttattcattaatgaagttatcttcaacaatagcggatgcacca 25024479  T
Q  162 aagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25024480 aagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataa 25024539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 5287865 - 5288011
Alignment:
Q  62 acaatatatataaaagcagaaatgcactcaaatcacgcatttcattgttaaccagcgttattcattaatgaagttatcttcaacaacagcggatgcacca 161  Q
    |||||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| | ||||||||||||||||| |||||||| || ||||| || ||||    
T  5287865 acaatatatataaaagtagaaatgaactcaaatcactcaactcattgttaaccaacattattcattaatgaagtcatcttcaaaaatagcgggtgtacca 5287964  T
Q  162 aagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    ||||||||| || |||||||||||||| ||||||||||  |||||||    
T  5287965 aagctattaccatcatcaacaaaagttggaagtccaccggttgtcaa 5288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25024152 - 25024211
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25024152 attcataatagcttatcagacaaaatgacatactatcaagttacaaattacaatcacttc 25024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 5287312 - 5287369
Alignment:
Q  2 ttcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcactt 59  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  5287312 ttcataatagcttatcggacaaaatgacatactatcaagttacaacttacaatcactt 5287369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 43727868 - 43727952
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||||| ||||| |||||||||||||||| || |||||||||||||| ||||| ||||| || ||||  ||||| |||||    
T  43727868 atcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaactcatgtcaataa 43727952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 9230276 - 9230357
Alignment:
Q  140 ttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||| ||| | || || || |||| |||||| |||||    
T  9230276 ttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcagttatcaagccatgtcaataa 9230357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 24276519 - 24276460
Alignment:
Q  149 agcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    ||||| |||||||||||||| | || |||||||||||||| ||||||||||| |||||||    
T  24276519 agcgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaa 24276460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23180322 - 23180265
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| | | ||||| |||||  |||||||||||| |||||||||||||    
T  23180322 attcataatagcttattaaataaaatgacata--atcaagttacaacttacaatcacttc 23180265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 24333511 - 24333657
Alignment:
Q  62 acaatatatataaaagcagaaatgcactcaaatcacgcatttcattgttaaccagcgttattcattaatgaagttatcttcaacaacagcggatgcacca 161  Q
    |||||||||||||||  |||||||||||||||||    || | ||||||||||||||||||||||||| |||||||||||| |||| ||| | |||||||    
T  24333511 acaatatatataaaaatagaaatgcactcaaatcgtctatctaattgttaaccagcgttattcattaacgaagttatcttcgacaatagcaggtgcacca 24333610  T
Q  162 aagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    || |||||| || |||||| ||||||| ||||||||||  |||||||    
T  24333611 aaactattaccaacatcaataaaagttggaagtccaccggttgtcaa 24333657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23448981 - 23449045
Alignment:
Q  2 ttcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaat 66  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  23448981 ttcataatagcttattagacaaaatgacatagtatcaagttacaaattacaatcacttctgcaat 23449045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27190508 - 27190574
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaata 67  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27190508 attcataatagtttatcggacaaaatgacatactatcaagttacaacttacaatcagttctacaata 27190574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14446562 - 14446627
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaat 66  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  14446562 attcataataacttattagacaaaataacatactataaagttacaacttgcaatcacttctacaat 14446627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28846347 - 28846412
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaat 66  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  28846347 attcataatagcttattagacaaaatgacatactatcaagttacaacttactatcacttttacaat 28846412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 27190661 - 27190721
Alignment:
Q  155 tgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgt 215  Q
    |||||||||||||||| || |||||||||||||| ||||||||||| ||||||| ||||||    
T  27190661 tgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgt 27190721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 13152697 - 13152619
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgt 215  Q
    |||||||| || || || |||||||||||||||| || |||||||||||||| ||||| ||||| || |||| ||||||    
T  13152697 atcttcaataatagagggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaagccatgt 13152619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 9256293 - 9256344
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagtt 188  Q
    ||||||||| | ||||| |||||||||||||||| || ||||||||||||||    
T  9256293 atcttcaacgatagcgggtgcaccaaagctattaccaacatcaacaaaagtt 9256344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 14446725 - 14446768
Alignment:
Q  157 caccaaagctattatcagcatcaacaaaagttagaagtccacca 200  Q
    |||||||||||||| || |||||||||||||| |||||||||||    
T  14446725 caccaaagctattaccaacatcaacaaaagttggaagtccacca 14446768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 24333291 - 24333342
Alignment:
Q  9 tagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||| ||| |||||  |||||||||||||||||| |||||||||||||    
T  24333291 tagcttattagataaaatggcatactatcaagttacaacttacaatcacttc 24333342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30694318 - 30694376
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcactt 59  Q
    |||||||||||||||  ||||||||| ||||| ||| ||||||||| ||||| ||||||    
T  30694318 attcataatagcttaatagacaaaatgacataatattaagttacaacttacattcactt 30694376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 28846493 - 28846577
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||||| | ||| |||||||||||||| | || ||||||||||||||  ||||| |||| ||| ||| || ||| |||||    
T  28846493 atcttcaacaatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccctgtcaataa 28846577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 8035581 - 8035480
Alignment:
Q  106 ttgttaaccagcgttattcattaatgaagttatcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgt 205  Q
    |||||||||| | ||||||||||||||||||||||||||||  ||| | |||||||||||||||| || |||||||||||||| ||||||||| | ||||    
T  8035581 ttgttaaccaac-ttattcattaatgaagttatcttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacgagttgt 8035483  T
Q  206 caa 208  Q
    |||    
T  8035482 caa 8035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8035855 - 8035794
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttcta 62  Q
    |||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||    
T  8035855 attcctaatagcttatcagacaaaatgacatactatcaagttataacttacaatcacttcta 8035794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25340212 - 25340277
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaat 66  Q
    ||||||||||| |||| ||||||||| |||||||||||| |||||| |||||||||||| ||||||    
T  25340212 attcataatagtttattagacaaaatgacatactatcaaattacaatttacaatcacttatacaat 25340277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 11970717 - 11970760
Alignment:
Q  17 cagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  11970717 cagacaaaatgacatactatcaagttacaacttacaatcacttc 11970760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50682719 - 50682660
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  50682719 attcataataacttatcagacaaaatgacatactatcaagttacaacttacaatcacttc 50682660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30559450 - 30559385
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaat 66  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  30559450 attcataatggcttattagacaaaatgacatactatcaagttacaacttacaatcatttctacaat 30559385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 14498770 - 14498854
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||||| ||||| || |||||||||||||||| |||||||||||||| ||||| ||||| |  |||| |||||| |||||    
T  14498770 atcttcaacaatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagtcatcaagccatgtcaataa 14498854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9636862 - 9636921
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||||    
T  9636862 attcataatagcttattagacaaaatgacataatatcaagttacaacttacactcacttc 9636921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 30559308 - 30559237
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    ||||||||||| ||||| |||||||||||||||| || ||||||||||||||  |||||||||  |||||||    
T  30559308 atcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaa 30559237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25017300 - 25017359
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||| ||| |||||||||    
T  25017300 attcataatagcttattaggcaaaatgacataatatcaagttacaacttataatcacttc 25017359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 52754087 - 52754036
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagtt 188  Q
    ||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||    
T  52754087 atcttcaacaatagcgggtgcaccaaagctattatcaacattaacaaaagtt 52754036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48607049 - 48606991
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcactt 59  Q
    ||||||||||||||||  || ||||||||||| ||||||||||||| ||| ||||||||    
T  48607049 attcataatagcttattggagaaaataacataatatcaagttacaacttaaaatcactt 48606991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 9636994 - 9637056
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccacc 199  Q
    ||||||||||| ||||| ||||||||||| ||||  | ||||||||||||||  |||||||||    
T  9636994 atcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccacc 9637056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 48606915 - 48606854
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccac 198  Q
    ||||||||||| |||   |||||||||||||||| ||  ||||||||||||| |||||||||    
T  48606915 atcttcaacaatagcaagtgcaccaaagctattaccaaaatcaacaaaagttggaagtccac 48606854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 51379502 - 51379584
Alignment:
Q  126 ttaatgaagttatcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    ||||||||||| |||||||||| ||| | |||||||||||||||| || |||||||||||||| ||||||||||  |||||||    
T  51379502 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 51379584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 29528292 - 29528232
Alignment:
Q  13 ttatcagacaaaataacatactatcaagttacaaattacaatcacttctacaatatatata 73  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||||| || ||||||    
T  29528292 ttattagacaaaatgacatactatcaagttacaacttacaatcacttctactatttatata 29528232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17359197 - 17359255
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcactt 59  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||  ||||||||||||    
T  17359197 attcataatagcttattagacaaaatgacataatatcaagttacagcttacaatcactt 17359255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31944360 - 31944418
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| ||||||| | ||| | ||||||||||||| |||||||||||||    
T  31944360 attcataatagcttattagacaaa-tgacagaatatcaagttacaacttacaatcacttc 31944418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 31944488 - 31944551
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccacca 200  Q
    ||||||||||| ||||| ||||  |||||||||| || ||| |||||||||| |||||||||||    
T  31944488 atcttcaacaatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccacca 31944551  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28841156 - 28841213
Alignment:
Q  3 tcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  28841156 tcataatagcttattagacaaaatgacatactatcaagttacaacttacaatcacttc 28841213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12539315 - 12539374
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||    
T  12539315 attcataatagcttattagacaaaatgacataatatcaagttacaacttacaatcacttc 12539374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 12539446 - 12539509
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccacca 200  Q
    ||||| ||||| ||||| |||||||||||||||| || |||||||||||||| |||||||||||    
T  12539446 atctttaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacca 12539509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 34317770 - 34317707
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccacca 200  Q
    ||||||||||| ||||| || ||||||||||||| || |||||||||||||| |||||||||||    
T  34317770 atcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccacca 34317707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34318198 - 34318153
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaa 46  Q
    |||||||||||||||  ||||||||| ||||| |||||||||||||    
T  34318198 attcataatagcttactagacaaaatgacataatatcaagttacaa 34318153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27169229 - 27169170
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||    
T  27169229 attcataatagcttattagacaaaatgacataatatcaagttacaacttacaatcacttc 27169170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 11852568 - 11852658
Alignment:
Q  118 gttattcattaatgaagttatcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaa 208  Q
    |||||||||||||||||||||||||||||| || || ||||||||| ||||||  | ||||||||||||| | || |||| || |||||||    
T  11852568 gttattcattaatgaagttatcttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaa 11852658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 8785655 - 8785716
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccac 198  Q
    ||||||||||| ||||| |||||||||||||||| || |||||||||||||| |||||||||    
T  8785655 atcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccac 8785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 11849857 - 11849917
Alignment:
Q  63 caatatatataaaagcagaaatgcactcaaatcacgcatttcattgttaaccagcgttatt 123  Q
    ||||||||||||||||||||||||||||||||||| ||| | |||||||| || |||||||    
T  11849857 caatatatataaaagcagaaatgcactcaaatcactcatctaattgttaaacatcgttatt 11849917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 3055353 - 3055400
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaa 184  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  3055353 atcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaa 3055400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40813582 - 40813641
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    ||||||||||| |||||||||||||| ||||| ||||| ||||||| || ||||||||||    
T  40813582 attcataatagtttatcagacaaaatgacataatatcaggttacaacttgcaatcacttc 40813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 11849683 - 11849720
Alignment:
Q  28 acatactatcaagttacaaattacaatcacttctacaa 65  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11849683 acatactatcaagttacaacttacaatcacttctacaa 11849720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8785524 - 8785580
Alignment:
Q  1 attcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcac 57  Q
    |||||||||||||||| ||||||||| ||||| |||||| |||||  ||||||||||    
T  8785524 attcataatagcttattagacaaaatgacataatatcaaattacaccttacaatcac 8785580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 27169098 - 27169035
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccacca 200  Q
    |||||||| || ||||| || ||||||||||||| || |||||||||||| | |||||||||||    
T  27169098 atcttcaataatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccacca 27169035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 51261732 - 51261789
Alignment:
Q  2 ttcataatagcttatcagacaaaataacatactatcaagttacaaattacaatcactt 59  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||    
T  51261732 ttcataatagcttattagacaaaattacatactatcaagatacaacttacaatcactt 51261789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 51261851 - 51261935
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||||| ||| | |||| ||||||||||| || |||||||||||||| ||||||||||| ||||||| || ||| |||||    
T  51261851 atcttcaacaatagcaggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccctgtcaataa 51261935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 3857179 - 3857095
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatccatgttaataa 221  Q
    ||||||||||| ||| | ||||||||||||||||  | |||||||||||||| ||||||||||| || |||| || ||| |||||    
T  3857179 atcttcaacaatagcaggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgtcaataa 3857095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 55194791 - 55194845
Alignment:
Q  2 ttcataatagcttatcagacaaaataacatactatcaagttacaaattacaatca 56  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||| |||||||||    
T  55194791 ttcataatagcttattggacaaaattacataatatcaagttacaacttacaatca 55194845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 3857303 - 3857259
Alignment:
Q  8 atagcttatcagacaaaataacatactatcaagttacaaattaca 52  Q
    ||||||||| ||||||||| ||||| ||||||||||||| |||||    
T  3857303 atagcttattagacaaaatgacataatatcaagttacaacttaca 3857259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 17612 - 17685
Alignment:
Q  137 atcttcaacaacagcggatgcaccaaagctattatcagcatcaacaaaagttagaagtccaccaattgtcaatc 210  Q
    ||||||||||| || || ||||||||| |||||| || |||||||||||||| ||||||||||| || ||||||    
T  17612 atcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatc 17685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 17486 - 17540
Alignment:
Q  6 taatagcttatcagacaaaataacatactatcaagttacaaattacaatcacttc 60  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||||    
T  17486 taatagcttattagacaaaatgacataatatcaagttacaacttacactcacttc 17540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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