View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_high_2 (Length: 343)
Name: NF7205_high_2
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 47712620 - 47712937
Alignment:
| Q |
10 |
cctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47712620 |
cctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacga |
47712719 |
T |
|
| Q |
110 |
tcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctat |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47712720 |
tcacgaaccctataagcataatgcgcctcctccacaccttcatactcctccctaggaaaaatcctcttcgcgatactctcacacaacaatgtcgccctat |
47712819 |
T |
|
| Q |
210 |
caaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcaga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712820 |
caaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagc |
47712919 |
T |
|
| Q |
310 |
aaaatgatcagatataca |
327 |
Q |
| |
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|||||||||||||||||| |
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| T |
47712920 |
aaaatgatcagatataca |
47712937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 19785862 - 19785555
Alignment:
| Q |
14 |
ttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcac |
113 |
Q |
| |
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|||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19785862 |
ttgtaaggaatcaaaccccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcac |
19785763 |
T |
|
| Q |
114 |
gaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaa |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| | |||| | |||||| |
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| T |
19785762 |
gaaccctataagcataatgtgcctcctccacaccttcatattcctcccgagggaagatcctctttgcaatactctcacacagaagagtcgatcgatcaaa |
19785663 |
T |
|
| Q |
214 |
tgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaa |
313 |
Q |
| |
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||||||||||| ||||| |||||||| |||||||| || || || ||| | ||||| |||||||||||| || ||| ||||| |||||||||| |||| |
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| T |
19785662 |
ggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaaa |
19785563 |
T |
|
| Q |
314 |
tgatcaga |
321 |
Q |
| |
|
|||||||| |
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|
| T |
19785562 |
tgatcaga |
19785555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 19795725 - 19796038
Alignment:
| Q |
14 |
ttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcac |
113 |
Q |
| |
|
||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
19795725 |
ttgtatggaatcaaaccccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcac |
19795824 |
T |
|
| Q |
114 |
gaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaa |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| || || ||||||||| | || | || |||||| |
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| T |
19795825 |
gaaccctataagcataatgtgcctcctccacaccttcatactcctccctagggaagatcttcttggcaatggtctcacacagaagagttgaccgatcaaa |
19795924 |
T |
|
| Q |
214 |
tgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaa |
313 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| |||||||||| ||| |
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| T |
19795925 |
ggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatcagcgaaa |
19796024 |
T |
|
| Q |
314 |
tgatcagatataca |
327 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
19796025 |
tgatcagagataca |
19796038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 15835035 - 15835345
Alignment:
| Q |
17 |
taaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaa |
116 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15835035 |
taaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaacgccttcctcaacggcaccaacacatctttcctcaaacgatcacgaa |
15835134 |
T |
|
| Q |
117 |
ccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatga |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||| || |||||||| || || ||||||||| | || | || |||||| || |
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|
| T |
15835135 |
ccctataagcataatgcgcctcctccacaccttcatattcctcccgagggaatatcctcttggcaatggtctcacacagaagagttgaccgatcaaagga |
15835234 |
T |
|
| Q |
217 |
agagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatga |
316 |
Q |
| |
|
||||| || || || |||||||| ||||||||||| || ||| ||| |||||| ||||||||||||||| ||| ||||| |||||||||| ||||||| |
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| T |
15835235 |
agagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatcagcaaaatga |
15835334 |
T |
|
| Q |
317 |
tcagatataca |
327 |
Q |
| |
|
| ||| ||||| |
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|
| T |
15835335 |
tgagagataca |
15835345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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