View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7205_high_4 (Length: 328)
Name: NF7205_high_4
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 34350273 - 34349968
Alignment:
| Q |
17 |
ataaactagtagtatgtgggtatgtttttctttattcttatgcttttcttatcttaaaagagaaatcaagaacaagaaattcagacaaacttgaaacccc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34350273 |
ataaactagtagtatgtgggtatgtttttctttattcttatgcttttcttatcttaaaagagaaatcaagaacaagaaattcagacaaacttgaaacccc |
34350174 |
T |
|
| Q |
117 |
gacaagagaatccatccatatatagacttaagaatcaatttagtgaacaatttataaagcacttcgaatttcacaaagctctatatagtatatggttctc |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34350173 |
gacaagagaatccattcatatacagacttaagaatcaatttagtgaacaatttataaagcacttcgaatttcacaaagctctatatagtatatggttctc |
34350074 |
T |
|
| Q |
217 |
tcacatgggagaatttcccattctgtacataaggaactcattcacttctcaaaagattaggaag-nnnnnnnnttgcctaataaaggattgttctaggag |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34350073 |
tcacatgggagaatttcccattccgtacataaggaactcattcacttctcaaaagattaggaagaaaaaaaaattgcctaataaaggattgttctaggag |
34349974 |
T |
|
| Q |
316 |
tattat |
321 |
Q |
| |
|
|||||| |
|
|
| T |
34349973 |
tattat |
34349968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University