View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_high_5 (Length: 310)
Name: NF7205_high_5
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 3529647 - 3529938
Alignment:
| Q |
1 |
aaaacttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaacaag |
100 |
Q |
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| T |
3529647 |
aaaacttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaag--gattgtgatggaattagaacaag |
3529744 |
T |
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| Q |
101 |
atcatgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttga |
200 |
Q |
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| T |
3529745 |
accatgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttga |
3529844 |
T |
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| Q |
201 |
tggtagtgattctccaagacaacaaagtttaagaaaacatgtcaaagttcaacaccaacatcacaaaaaacaagttagaagaaggcttcatact |
294 |
Q |
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| T |
3529845 |
tggtagtgattctccaagacaacaaagtttaagaaaacatgtcaaagttcaacaccaacatcacaaaaaacaagttagaagaaggcttcatact |
3529938 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 1796159 - 1796067
Alignment:
| Q |
116 |
gtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttgatggtagtg |
208 |
Q |
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| T |
1796159 |
gtgcttgcattcaaagcttaatgaaacaattaataaccataaagtcaaaagaaaccatgaacactaccaaagaatgtgttttttatggtagtg |
1796067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1796804 - 1796739
Alignment:
| Q |
31 |
gttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaaca |
98 |
Q |
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| T |
1796804 |
gttatatacatgaccacataaaaataaatcaagaaaccaa--aaaaggattatgatggaattagaaca |
1796739 |
T |
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