View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_low_1 (Length: 704)
Name: NF7205_low_1
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 346 - 689
Target Start/End: Original strand, 6117924 - 6118268
Alignment:
| Q |
346 |
tgattaacacagttgcaaacacaaacacactctacttatgcaattctaattcgctagattagattttatgaatctaaaatcaaattcactagcaggtttc |
445 |
Q |
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| T |
6117924 |
tgattaacacagttgcaaacacaaacacattctacttatgcaattctaattcgctagattagattttatgaatctaaaatcaaattcactagcaggtttc |
6118023 |
T |
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| Q |
446 |
acttacttgaactgaaaatcattagttcacagtttagtggagattttttgagctaagtataagattaagattaacaaaatcaacagaaagcaacaaagtg |
545 |
Q |
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| T |
6118024 |
acttacttgaactgaaaatcattagttcacagtttagcggagattttttgagctaagtataagattaagattaacaaaatcaacagaaagcaacaaagtg |
6118123 |
T |
|
| Q |
546 |
aaaattaaagtagaattgaaaaagctaaattcatagatgcgaattaatttttgcag-agaaagaaaaaattgaacgaaaggcgaggatcccgaggagaac |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6118124 |
aaaattaaagtagaattgaaaaagctaaattcatagatgcgaattaatttttgcagaagaaagaaaaaattgaacggaaggcgaggatcccgaggagaac |
6118223 |
T |
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| Q |
645 |
tgacgaatgagaagtaagaagagagatacctgatgagagaaatga |
689 |
Q |
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| T |
6118224 |
tgacgaataagaagtaagaagagagatacctgatgagagaaatga |
6118268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 6117572 - 6117899
Alignment:
| Q |
7 |
tcgaagaatatcaagcatctagaagaacatatttgtctacctcaattacccctattgcctattacaactaacaaaaaatcatttctaatagcattggcac |
106 |
Q |
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| T |
6117572 |
tcgaagaaaatcaagcatctagaagaacatatttgtctacctcaattaaccctattgcctattacaactaacaaaaaatcatttctaatagcattggcac |
6117671 |
T |
|
| Q |
107 |
ctctgataaaaggtgtgtccagtatccgatgtaattacgtccaattaattcattttatcaaaatattattggtgtcaacgtgtcaggtgtctctgcatca |
206 |
Q |
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| T |
6117672 |
ctctgataaaaggcgtgtccagtatccgatgtaattacctccaattaattcattttatcaaaatattatcggtgtcaacgtgtcaggtgtctctgcatcg |
6117771 |
T |
|
| Q |
207 |
ctacttcatactttctactaattttttaacctaaatttttattatagattaaaaattaaaaactacatctgtttcatcacataactaacttaagaacaaa |
306 |
Q |
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| T |
6117772 |
ctacttcatactttctactaattttttaacctaaatttttattatagattaaaaattaaaaactacatctgtttcatcacataactaacttaagaacaaa |
6117871 |
T |
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| Q |
307 |
ttaacaaactactatcaatataaagata |
334 |
Q |
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| T |
6117872 |
ttaacaaactactatcaatataaagata |
6117899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 7250995 - 7251032
Alignment:
| Q |
155 |
ttcattttatcaaaatattattggtgtcaacgtgtcag |
192 |
Q |
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| T |
7250995 |
ttcattttctcaaattattattggtgtcaacgtgtcag |
7251032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 34598585 - 34598537
Alignment:
| Q |
135 |
atgtaattacgtccaattaattcattttatcaaaatattattggtgtca |
183 |
Q |
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|||| ||||| ||||||||||||||||| ||||| |||||| ||||||| |
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| T |
34598585 |
atgtgattacatccaattaattcattttctcaaattattatcggtgtca |
34598537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 9878057 - 9878101
Alignment:
| Q |
148 |
caattaattcattttatcaaaatattattggtgtcaacgtgtcag |
192 |
Q |
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|||||||||||| || ||||| ||||||||||||| ||||||||| |
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| T |
9878057 |
caattaattcatattctcaaattattattggtgtcgacgtgtcag |
9878101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 19154596 - 19154636
Alignment:
| Q |
152 |
taattcattttatcaaaatattattggtgtcaacgtgtcag |
192 |
Q |
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| T |
19154596 |
taattcattttatcaaattataattggtgtcaacctgtcag |
19154636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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