View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7205_low_10 (Length: 245)

Name: NF7205_low_10
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7205_low_10
NF7205_low_10
[»] chr7 (3 HSPs)
chr7 (3-171)||(4658244-4658407)
chr7 (176-245)||(4658442-4658511)
chr7 (195-245)||(25841133-25841183)
[»] chr1 (4 HSPs)
chr1 (195-243)||(384071-384119)
chr1 (195-245)||(384136-384186)
chr1 (195-243)||(19040101-19040149)
chr1 (195-245)||(19040034-19040084)
[»] chr8 (2 HSPs)
chr8 (195-245)||(44073791-44073841)
chr8 (195-245)||(44073724-44073774)
[»] chr5 (1 HSPs)
chr5 (195-245)||(1997767-1997817)
[»] chr4 (11 HSPs)
chr4 (194-245)||(53751456-53751507)
chr4 (195-245)||(8651993-8652043)
chr4 (195-245)||(8663800-8663850)
chr4 (195-245)||(22206871-22206921)
chr4 (135-197)||(23141942-23142004)
chr4 (195-245)||(23141950-23142000)
chr4 (195-245)||(53751375-53751425)
chr4 (195-240)||(8651839-8651884)
chr4 (195-240)||(8663646-8663691)
chr4 (195-240)||(53750843-53750888)
chr4 (195-243)||(15738271-15738319)
[»] scaffold0163 (1 HSPs)
scaffold0163 (195-245)||(6797-6847)
[»] chr6 (4 HSPs)
chr6 (195-245)||(24847859-24847909)
chr6 (195-245)||(24848032-24848082)
chr6 (195-245)||(24848268-24848318)
chr6 (195-240)||(24847787-24847832)
[»] chr3 (1 HSPs)
chr3 (195-244)||(50353995-50354044)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 4658244 - 4658407
Alignment:
Q  3 aatatatagaacctcttaaatagcaatgaccattcacttcttgaagcaataaatccttttcatatgagaggagagataaattgcattaatgttaattgca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  4658244 aatatatagaacctcttaaatagcaatgaccattcacttcttgaagcaataaatcctcttcattggagaggagagataaattgcattaatgttaattgca 4658343  T
Q  103 tagaagaaggttgtaccgttaacatacatggaatggaatgttatgagatctacggttgaaatgtagagg 171  Q
    |||| ||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||    
T  4658344 tagatgaaggttgtaccgttaatatac-----atggaatgttatgagatctacggttgaaatgtagagg 4658407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 4658442 - 4658511
Alignment:
Q  176 ttaactgagtcaattaacattatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4658442 ttaactgagctaattaacattatgagatctacggctgaaatgaaggaagtggttcactgagttgattaac 4658511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 25841133 - 25841183
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| ||||||| ||| | |||||||||||||    
T  25841133 ttatgagatctacggctgagatgtagggagtagttgattgagttgattaac 25841183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 384119 - 384071
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgatta 243  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  384119 ttatgagatctacggctgagatgaagggagtggttgactgagttgatta 384071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 384186 - 384136
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||||||||    
T  384186 ttatgagatctacggctgagatgcagggggtggttaactgagttgattaac 384136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 19040101 - 19040149
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgatta 243  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||||    
T  19040101 ttatgagatctacggctgagatgaagagagtggttgactgacttgatta 19040149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 19040034 - 19040084
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||  |||| |||||| |||||||||||||||    
T  19040034 ttatgagatctacggctgagatatagggggtggttgactgagttgattaac 19040084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 44073791 - 44073841
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  44073791 ttatgagatatacagctgagatgaagggagtggttgactgagttgattaac 44073841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 44073724 - 44073774
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| |||| |||||| |||| ||||||||||    
T  44073724 ttatgagatctacggctgagatgtagggggtggttgactgggttgattaac 44073774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 1997767 - 1997817
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| |||||||||||| || ||||| |||||||||    
T  1997767 ttatgagatctacggctgagatgaagggagtgattgactgacttgattaac 1997817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 53751456 - 53751507
Alignment:
Q  194 attatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    |||||||||||||||||||| ||| |  |||||||| |||||||||||||||    
T  53751456 attatgagatctacggctgagatgtaaagagtggttgactgagttgattaac 53751507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 8651993 - 8652043
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    |||||||||||||| |||| ||| | ||||||||| |||||||||||||||    
T  8651993 ttatgagatctacgactgagatgtaaggagtggttgactgagttgattaac 8652043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 8663800 - 8663850
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    |||||||||||||| |||| ||| | ||||||||| |||||||||||||||    
T  8663800 ttatgagatctacgactgagatgtaaggagtggttgactgagttgattaac 8663850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 22206921 - 22206871
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||| |||| |||||| |||||||||| |||| |||||||||||||||    
T  22206921 ttatgagttctatggctgagatgaagggagcggttgactgagttgattaac 22206871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 23141942 - 23142004
Alignment:
Q  135 atggaatgttatgagatctacggttgaaatgtagaggatgattaactgagtcaattaacatta 197  Q
    |||||| |||||||||||||||||||| |||||| || || || |||||||  ||||||||||    
T  23141942 atggaaggttatgagatctacggttgagatgtagggggtggttgactgagttgattaacatta 23142004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 23141950 - 23142000
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||| ||| ||| |||| |||||| |||||||||||||||    
T  23141950 ttatgagatctacggttgagatgtagggggtggttgactgagttgattaac 23142000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 53751375 - 53751425
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    |||||||||||||| |||| ||| | ||||||||| |||||||||||||||    
T  53751375 ttatgagatctacgactgagatgtaaggagtggttgactgagttgattaac 53751425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8651839 - 8651884
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttga 240  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  8651839 ttatgagatctacggctgagatgtaaggagtggttgactgagttga 8651884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 8663646 - 8663691
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttga 240  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  8663646 ttatgagatctacggctgagatgtaaggagtggttgactgagttga 8663691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 53750843 - 53750888
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttga 240  Q
    ||||||||||| ||||||||||| | ||||||||| ||||||||||    
T  53750843 ttatgagatctgcggctgaaatgtaaggagtggttgactgagttga 53750888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 15738319 - 15738271
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgatta 243  Q
    ||||||||||||| ||||| ||||||||||||||| ||| | |||||||    
T  15738319 ttatgagatctacagctgagatgaagggagtggttgactaacttgatta 15738271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 6847 - 6797
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| ||| ||| ||| |||||||||||||||    
T  6847 ttatgagatctacggctgagatgtaggtagtagttgactgagttgattaac 6797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 24847859 - 24847909
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| | ||||||||| |||| ||||||||||    
T  24847859 ttatgagatctacggctgagatgtaaggagtggttgactgggttgattaac 24847909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 24848032 - 24848082
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| | |||||| || |||||||||||||||    
T  24848032 ttatgagatctacggctgagatgtaaggagtgattgactgagttgattaac 24848082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 24848268 - 24848318
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaac 245  Q
    ||||||||||||||||||| ||| |  |||||||| |||||||||||||||    
T  24848268 ttatgagatctacggctgagatgtaaagagtggttgactgagttgattaac 24848318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 24847787 - 24847832
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttga 240  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  24847787 ttatgagatctacggctgagatgtaaggagtggttgactgagttga 24847832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 50353995 - 50354044
Alignment:
Q  195 ttatgagatctacggctgaaatgaagggagtggttcactgagttgattaa 244  Q
    ||||||||| ||||||||| ||| | ||||||||| ||||||||||||||    
T  50353995 ttatgagatatacggctgagatgtaaggagtggttaactgagttgattaa 50354044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University