View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_low_7 (Length: 303)
Name: NF7205_low_7
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 29287465 - 29287703
Alignment:
| Q |
17 |
acaaacgactgagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaaggaaaa |
116 |
Q |
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| T |
29287465 |
acaaacgagtgagaaccattatgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaaggaaaa |
29287564 |
T |
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| Q |
117 |
ataggagtctatgttgcattttccgcgcgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgcagcagt |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287565 |
ataggagtctatgttgcattttccgcacgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgcagcagt |
29287664 |
T |
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| Q |
217 |
tgagatgcgcgcgtttctgtttgtttctcccaaacgcgc |
255 |
Q |
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| T |
29287665 |
tgagatgcgcgtgtttctgtttgtttctcccaaacgcgc |
29287703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 35236184 - 35236436
Alignment:
| Q |
27 |
gagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaaggaaaaataggagtct |
126 |
Q |
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| T |
35236184 |
gagaaccattctgtcccagcaagtacaaaactccgagtctcgtctctaacacacatctcaaaacctaccccggtttttattaaaagaaaaataggagtct |
35236283 |
T |
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| Q |
127 |
atgttgcattttccgcgcgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgcagcagttgagatgcgc |
226 |
Q |
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| T |
35236284 |
atgttgcattttcctcgcgacatatcaggttttctccacaaaggtgcatctgccacgctgcttctcccatgccacggctgtttcaac---tgag-tgcgc |
35236379 |
T |
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| Q |
227 |
gcgtttctgtttgtttctcccaaacgcgcaagctccaactcttccaaattctccaca |
283 |
Q |
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| T |
35236380 |
gtgtttctgtttgtttctcccaaacacgcaagttccgactcttccaaattctccaca |
35236436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 29290835 - 29290878
Alignment:
| Q |
250 |
acgcgcaagctccaactcttccaaattctccacattgtaaacac |
293 |
Q |
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| T |
29290835 |
acgcgcaagctccaactcttccaaattctccacattgtaaacac |
29290878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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