View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_low_8 (Length: 286)
Name: NF7205_low_8
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 9203046 - 9202780
Alignment:
| Q |
1 |
gtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaa |
100 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9203046 |
gtactcgaaacagaatcgaaaacggagcatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaa |
9202947 |
T |
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| Q |
101 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9202946 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttct |
9202847 |
T |
|
| Q |
201 |
gagaagcttcctttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaagattgaag |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9202846 |
gagaagcttcctttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaagattgaag |
9202780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 9176017 - 9175751
Alignment:
| Q |
1 |
gtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9176017 |
gtactcgaaacagaattgaaaacggagcatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaa |
9175918 |
T |
|
| Q |
101 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
9175917 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttcactgtttctgatttggacaattttccttat |
9175818 |
T |
|
| Q |
201 |
gagaagcttcctttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaagattgaag |
267 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
9175817 |
gagaggcttcctatgattcttgactggagtgttggaagtaaatattgtaatgcttcaaagaatgaag |
9175751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 9158056 - 9157794
Alignment:
| Q |
5 |
tcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattat |
104 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||| | |
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| T |
9158056 |
tcgaaacagaatagaaaacggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtatagaagcttctgatttt |
9157957 |
T |
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| Q |
105 |
ctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgaga |
204 |
Q |
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| ||| | || |||||||| ||||| |||| |||||||||||| |||| ||||||||||| ||| ||||| ||||||| |||||||||| ||||| |
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| T |
9157956 |
cctaattccacggattctttggggtgtagttattcatttgttgttaaagatgggttttataatttttctatttctcatttggataattttccttatgaga |
9157857 |
T |
|
| Q |
205 |
agcttcctttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaagattgaag |
267 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
9157856 |
ggcttcctatgattcttgactggagtgttggaagtaaatattgtaatgcttcaaagaatgaag |
9157794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 9114406 - 9114661
Alignment:
| Q |
5 |
tcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattat |
104 |
Q |
| |
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|||||| ||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||| | || | |
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| T |
9114406 |
tcgaaagagaattgaaaatggaacatgttctggtattggttgttgtgaagttgatattccacctaagatgaggaatataactatagaagcttttgctttt |
9114505 |
T |
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| Q |
105 |
ctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgaga |
204 |
Q |
| |
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| ||| || ||||||||| ||||||| |||| |||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||| | |
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| T |
9114506 |
tttaattccaatgaatctttgagatgtagatattcttttgttgttaaaaatggagcttataatttttctgtttctcatttggacaaatttcctcacacgg |
9114605 |
T |
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| Q |
205 |
agcttcctttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaag |
260 |
Q |
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||||||||||||||||||| |||||||||| |||| || ||||||| ||||||||| |
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| T |
9114606 |
agcttcctttgattcttgattggagtgttgcaagtgaaaattgtaaggcttcaaag |
9114661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 9164163 - 9163916
Alignment:
| Q |
13 |
gaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgattt |
112 |
Q |
| |
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|||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| | ||| || ||| |
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| T |
9164163 |
gaatcgaaaatggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtgtacaagcttttgattttcctaattc |
9164064 |
T |
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| Q |
113 |
aaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgagaagcttcct |
212 |
Q |
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| || ||||| || ||||| |||| |||||||||||| ||||||||||||||||| ||||| | ||||||| | ||||| | | ||| ||||||| |
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| T |
9164063 |
cacggattctttagggtgtagttattcatttgttgttaaagatggattttataatttcactgttgatcatttggatatatttccctataagatgcttcct |
9163964 |
T |
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| Q |
213 |
ttgattcttgactggagtgttggaagtaaacattgtaatgcttcaaag |
260 |
Q |
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||| ||||||| ||||||||||||||| || ||||||| ||||||||| |
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| T |
9163963 |
ttggttcttgattggagtgttggaagtgaaaattgtaaggcttcaaag |
9163916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 9220497 - 9220274
Alignment:
| Q |
14 |
aattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgattta |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||| ||| || ||| |
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| T |
9220497 |
aattgaaaacggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaagtttctgattttcctaattcc |
9220398 |
T |
|
| Q |
114 |
aacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgagaagcttcctt |
213 |
Q |
| |
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| || |||||||| ||||| |||| |||||||||||| |||||| |||||||| |||||||| ||||||| |||||||||| | ||| |||||| | |
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| T |
9220397 |
acggattctttggggtgtagttattcatttgttgttaaagatggatcctataattttactgtttctcatttggataattttccttataagatgcttccat |
9220298 |
T |
|
| Q |
214 |
tgattcttgactggagtgttggaa |
237 |
Q |
| |
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|||||||||| |||||||| |||| |
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| T |
9220297 |
tgattcttgattggagtgtgggaa |
9220274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 1840314 - 1840392
Alignment:
| Q |
24 |
ggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
102 |
Q |
| |
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|||| |||||||||||| || ||||| |||||||||||||| |||| ||||| |||||| ||||||| || |||||| |
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| T |
1840314 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
1840392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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