View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7205_low_9 (Length: 277)
Name: NF7205_low_9
Description: NF7205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7205_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 9242366 - 9242623
Alignment:
| Q |
1 |
ctctaatttggtgaaaacttaggtaagtattacttgttacaacatcttccttaaatcaaatgaaaatatagtatacacaaaatgaaaaagaaatgaatga |
100 |
Q |
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| T |
9242366 |
ctctaatttggtgaaaacttaggtaagtattacttgttgcaacatcttccttaaatcaaatgaaaatatagtatccacaaaatgaaaaagaaatgaatga |
9242465 |
T |
|
| Q |
101 |
acacatggatctatcataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttggattcgtgaagatggacgagcaaccata |
200 |
Q |
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| T |
9242466 |
atacgtggttgcatcataccaaaagtaacaaagcagagttgaaggtatcgactataacgaacaccatccttggattcgtgaagatggacgagcaaccata |
9242565 |
T |
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| Q |
201 |
aggtataaagctgccatatgaatgctattgtcaaacttattattccccatgtcctgca |
258 |
Q |
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| T |
9242566 |
aggtataaagctgccatatgaatgctattgtcaaacttattattccccatgtcctgca |
9242623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 9256928 - 9257073
Alignment:
| Q |
116 |
ataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttg---gattcgtgaagatggacgagcaaccataaggtataaagct |
212 |
Q |
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||||| ||||| || |||||||| |||||||||||||| || |||| ||| | || | |||||||||||||||||||||||||||||||| ||||| | |
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| T |
9256928 |
ataccgaaagtggcgaagcaaagctgaaggtatcgactgtagcgaataccgttctcgacggattcgtgaagatggacgagcaaccataaggtgtaaagtt |
9257027 |
T |
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| Q |
213 |
gccatatgaatgctattgtcaaacttattattccccatgtcctgca |
258 |
Q |
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| T |
9257028 |
gccatatgaatgctattgtcaagctcaatattccccatgtcctgca |
9257073 |
T |
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