View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7206_low_3 (Length: 287)

Name: NF7206_low_3
Description: NF7206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7206_low_3
NF7206_low_3
[»] chr5 (2 HSPs)
chr5 (1-272)||(28532177-28532446)
chr5 (218-272)||(29021373-29021427)
[»] chr6 (2 HSPs)
chr6 (1-272)||(6588696-6588962)
chr6 (1-41)||(8913659-8913699)
[»] chr4 (7 HSPs)
chr4 (94-265)||(21833758-21833929)
chr4 (145-254)||(53761248-53761357)
chr4 (1-45)||(21833970-21834014)
chr4 (224-259)||(1601088-1601123)
chr4 (89-184)||(3438105-3438200)
chr4 (114-195)||(547490-547571)
chr4 (87-184)||(55908183-55908280)
[»] chr3 (2 HSPs)
chr3 (89-270)||(51763815-51763996)
chr3 (4-45)||(13470321-13470362)
[»] chr1 (1 HSPs)
chr1 (94-265)||(19467879-19468050)
[»] chr7 (4 HSPs)
chr7 (157-272)||(10615207-10615322)
chr7 (88-265)||(10169510-10169687)
chr7 (88-265)||(10177035-10177212)
chr7 (1-45)||(10615059-10615103)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 28532177 - 28532446
Alignment:
Q  1 accaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttgacg---acaattgg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||   ||| ||||    
T  28532177 accaagaaacgaagacaactggataacatgttgatcattcagaaacttactaagtccaatata-----caaatgtcggaaaccttgacgtcgacacttgg 28532271  T
Q  98 ataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaactc 197  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28532272 ataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtagagcaactc 28532371  T
Q  198 atcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtga 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532372 atcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtga 28532446  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 29021373 - 29021427
Alignment:
Q  218 acaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtga 272  Q
    ||||| |||||||||| ||||||||||||||||||||  ||||||| | ||||||    
T  29021373 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtga 29021427  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6588962 - 6588696
Alignment:
Q  1 accaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttgacgacaattggata 100  Q
    ||||||||| |||||||| | || |||||||||||||||||||||  || ||  | |     || || ||||||| |||||| || | ||||  ||||||    
T  6588962 accaagaaaggaagacaattcgacaacatgttgatcattcagaaacctattatcttc-----aagatccaaatgttggaaacttttatgacacatggata 6588868  T
Q  101 acaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaactcatc 200  Q
    ||||| |||||||||||| ||||  |  |||  | |||| ||| || |||||  ||||||||||||||| |  |||||||||||||||||||||||||||    
T  6588867 acaaataaaagagtccattataataacggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaactcatc 6588768  T
Q  201 agaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtga 272  Q
     || ||||| |||  | ||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||    
T  6588767 ggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatgagtcaattaaatgtga 6588696  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8913699 - 8913659
Alignment:
Q  1 accaagaaacgaagacaactggataacatgttgatcattca 41  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  8913699 accaagaaacaaagacaacttgacaacatgttgatcattca 8913659  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 21833929 - 21833758
Alignment:
Q  94 ttggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagca 193  Q
    ||||||||||||||||||| ||||||||||||||||||   ||| |||   ||||||||| | || |||||||||||| |||||||||||| |||||| |    
T  21833929 ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 21833830  T
Q  194 actcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 265  Q
    |||||||  | ||||  ||| ||  ||||| |||||||||||||||||| |||||||| |||||| ||||||    
T  21833829 actcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaataa 21833758  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 53761357 - 53761248
Alignment:
Q  145 aggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttga 244  Q
    ||||||||  ||||||||||||||| | || ||||||||| ||||||||||| ||| |||||    ||||  | ||||  |||| ||||||||||||| |    
T  53761357 aggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaacccttca 53761258  T
Q  245 aactcaccaa 254  Q
    ||||||||||    
T  53761257 aactcaccaa 53761248  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21834014 - 21833970
Alignment:
Q  1 accaagaaacgaagacaactggataacatgttgatcattcagaaa 45  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  21834014 accaagaaatgaatacaactggacaacatgttgatcattcagaaa 21833970  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 1601088 - 1601123
Alignment:
Q  224 caagacaagtcaaacccttgaaactcaccaatgagt 259  Q
    ||||||||||||||||||| ||||||||||||||||    
T  1601088 caagacaagtcaaacccttcaaactcaccaatgagt 1601123  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 3438200 - 3438105
Alignment:
Q  89 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 184  Q
    |||| |||||||||| | |||||| | || |||||||||||||   |||||| |  ||||||||| || ||||||||||||||||  |||||||||    
T  3438200 gacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaaggaagacctccaattgcaatag 3438105  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 547490 - 547571
Alignment:
Q  114 tccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaac 195  Q
    |||| |||||||||||||  | |||||||  |||||||||||| ||||||||| | || || ||||||||| | ||||||||    
T  547490 tccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaac 547571  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 55908280 - 55908183
Alignment:
Q  87 acgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 184  Q
    |||||| |||||||||||| |  | | |||| ||||| |||||||   ||||||||  ||||||||  || ||||||||||||||||| |||||||||    
T  55908280 acgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 55908183  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 51763996 - 51763815
Alignment:
Q  89 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgta 188  Q
    |||| ||||||| |||||||| || |||| ||||||||||||||  |||| |||  ||||||||| || ||||| |||||||| |||||||||| | |||    
T  51763996 gacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagta 51763897  T
Q  189 gagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgt 270  Q
    ||||||||||||||| || || |||   | |||| ||||| ||||||||||||| ||||||||||| || ||||||| ||||    
T  51763896 gagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcaccaacgaatcaataaaatgt 51763815  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 13470362 - 13470321
Alignment:
Q  4 aagaaacgaagacaactggataacatgttgatcattcagaaa 45  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  13470362 aagaaacgaagacaattggagaacatgttgatcattcagaaa 13470321  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 19468050 - 19467879
Alignment:
Q  94 ttggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagca 193  Q
    ||||||||||||||||||| |||| |||| |||| |||  |||||| ||| ||||||||| | |||||||| || ||| ||| |||||||| ||||||||    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  194 actcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 265  Q
      |||||||| ||||| | | |  || ||  |||| ||||||||||||| ||||||| ||||||||||||||    
T  19467950 tttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataa 19467879  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 10615207 - 10615322
Alignment:
Q  157 gtcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatg 256  Q
    ||||||||||||||  |||||||||||| ||| | ||| | ||  || ||||| | | | | |||| ||||||||||||| ||||| |||||||||||||    
T  10615207 gtcaaaggaagacccacccttgcaatagagtaaaacaagttatttgagatattcataaactgcaaatcaagacaagtcaagcccttcaaactcaccaatg 10615306  T
Q  257 agtcaataatatgtga 272  Q
    ||||||||| ||||||    
T  10615307 agtcaataaaatgtga 10615322  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 10169687 - 10169510
Alignment:
Q  88 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 187  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10169687 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10169588  T
Q  188 agagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 265  Q
    ||||||  |||||||| ||||  | | |   ||||  |||| ||||||||||||| ||||||||||  ||||||||||    
T  10169587 agagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaataa 10169510  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 10177212 - 10177035
Alignment:
Q  88 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 187  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10177212 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10177113  T
Q  188 agagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 265  Q
    ||||||  |||||||| ||||  | | |   ||||  |||| ||||||||||||| ||||||||||  ||||||||||    
T  10177112 agagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaataa 10177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10615059 - 10615103
Alignment:
Q  1 accaagaaacgaagacaactggataacatgttgatcattcagaaa 45  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||    
T  10615059 accaagaaatgaagacaattggacaacatgttgatcattcagaaa 10615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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