View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_high_1 (Length: 844)
Name: NF7207_high_1
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Complemental strand, 51755917 - 51755266
Alignment:
| Q |
20 |
attactatcatgtttttagatcacagcctcattggctttgtagcactataagttggtaatgatttggcaatcttctttttcatgaaagcttgaaagatat |
119 |
Q |
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| T |
51755917 |
attactatcatgtttttagatcacagcctcattggctttgtagcgctataagttggtaatgatttggcaatcttctttttcatgaaagcttgaaagat-- |
51755820 |
T |
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| Q |
120 |
gtgcaaaatccaagagtcggcatcgaagcacttgtacaaacactacaatatataccggtaataattaagaaaataaaaatgattgaatagaaccacnnnn |
219 |
Q |
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| T |
51755819 |
gtgcaaaatccaagagtcggcatcgaagcacttgcacaaacactacaata----ccggtaataattaagaaaataaaaatgattgaatagaaccacatat |
51755724 |
T |
|
| Q |
220 |
nnnnnnnnnncggtcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcaacc |
319 |
Q |
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| T |
51755723 |
atat------cggtcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcagcc |
51755630 |
T |
|
| Q |
320 |
gtcaacacacaatgtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgcctaacacaatttcacgttccataac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51755629 |
gtcaacacacaatgtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgccaaacacaatttcacgttccataac |
51755530 |
T |
|
| Q |
420 |
ctctatacttaccatagccctgttatacagttcactgtatgatatgatatatatactttgtcttgtagaacaagaaatgcaaggcctccctttgaaaaca |
519 |
Q |
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| T |
51755529 |
ctctatacttaccatagccctgttatacagttcactgtatgatatgata--tatactttgtcttgtagaacaagaaatgcaaggcctccctttgaaaaca |
51755432 |
T |
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| Q |
520 |
aggtccatttggaaaatacaaatttagggaacataaaagcgtttatatcagaattactgacttgagaaatctcatgaaattttcattgcagtaaatagta |
619 |
Q |
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| T |
51755431 |
aggtccatttggaaaatacaaatttagggaacataaaagcgtttatatcagaattactgacttgagaaatctcatgaaattttcattgcagtaaatagta |
51755332 |
T |
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| Q |
620 |
taattatacctcacgatatctctttactttttgttaccttatcaaaagaggtgttaaaggttaacc |
685 |
Q |
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| T |
51755331 |
taattatacctcaccatatctctttactttttgttaccttatcaaaagaggtgttaaaggttaacc |
51755266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 721 - 832
Target Start/End: Complemental strand, 51755164 - 51755053
Alignment:
| Q |
721 |
aaggttataaggctcaattgcttattatgtaagagtttaattttccacgtgggggcatggagatgatgtgggagtgatttggctaattccttttacacaa |
820 |
Q |
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| T |
51755164 |
aaggttataaggctcaattgcttattatgtaagagtttaattttccacgtgggggcatggggatgatgtgggagtgatttggctaattccttttacacaa |
51755065 |
T |
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| Q |
821 |
catgatgtccat |
832 |
Q |
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| T |
51755064 |
catgatgtccat |
51755053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 419
Target Start/End: Complemental strand, 51767455 - 51767276
Alignment:
| Q |
233 |
tcggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcaaccgtcaacacacaat |
332 |
Q |
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|||||||| ||||||||| ||||||| ||||||||| | ||| || | ||||||| ||| || || ||||||||||||||| |||||| ||||| |
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| T |
51767455 |
tcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgctacataggtcagtcgtcaatgcacaaa |
51767356 |
T |
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| Q |
333 |
gtcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgcctaacacaatttcacgttccataac |
419 |
Q |
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| T |
51767355 |
gtcaatagctggcctcaggcca-------gattttaatttctgatccatttctagcttctgccaaacacaatttcacgttcaataac |
51767276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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