View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_high_10 (Length: 244)
Name: NF7207_high_10
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 24563434 - 24563615
Alignment:
| Q |
15 |
tgacaccattaattatcataaaccattatcccatattttcaattaaatccgtcttatgctcctctagttaattcatatcttaggctcaccattgctctaa |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563434 |
tgacaccattaattatcataaaccactatcccatattttcaattaaatccgtcttatgctcctctagttaattcatatcttaggctcaccattgctctaa |
24563533 |
T |
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| Q |
115 |
aggaatctcttctaaaacacctagatatacgtccctcccttaggaatcacttctttcatttttaacttaaggtcattatctc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563534 |
aggaatctcttctaaaacacctagatatacgtccctcccttaggaatcacttctttcatttttaacttaaggtcattatctc |
24563615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 24604468 - 24604649
Alignment:
| Q |
15 |
tgacaccattaattatcataaaccattatcccatattttcaattaaatccgtcttatgctcctctagttaattcatatcttaggctcaccattgctctaa |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24604468 |
tgacaccattaattatcataaaccactatcccatattttcaattaaatccgtcttatgctcctctagttaattcatatcttaggctcaccattgctctaa |
24604567 |
T |
|
| Q |
115 |
aggaatctcttctaaaacacctagatatacgtccctcccttaggaatcacttctttcatttttaacttaaggtcattatctc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24604568 |
aggaatctcttctaaaacacctagatatacgtccctcccttaggaatcacttctttcatttttaacttaaggtcattatctc |
24604649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 12355793 - 12355665
Alignment:
| Q |
25 |
aattatcataaaccattatcccatattttcaattaaatccgtcttatgctcctcta--gttaattcatatcttaggctcaccattgctctaaaggaatct |
122 |
Q |
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|||||||||||| || |||||||||||| || ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12355793 |
aattatcataaatcactatcccatatttacagttaaatccgtcatatgctcttctatagttaattcatatcttaggctcaccattgctctaaaggcatca |
12355694 |
T |
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| Q |
123 |
cttctaaaacacctagatatacgtccctc |
151 |
Q |
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||||||||||||||| | |||| |||||| |
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| T |
12355693 |
cttctaaaacacctaaacatacctccctc |
12355665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 19201209 - 19201129
Alignment:
| Q |
27 |
ttatcataaaccattatcccatattttcaattaaatccgtcttatgctcctctagttaattcatatcttaggctcaccatt |
107 |
Q |
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|||||| |||||| | |||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
19201209 |
ttatcacaaaccaccaccccatattttcaattatattcgtcttatactcctctagttaatttgtatcttaaactcaccatt |
19201129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 19298664 - 19298736
Alignment:
| Q |
65 |
gtcttatgctcctctagttaattcatatcttaggctcaccattgctctaaaggaatctcttctaaaacaccta |
137 |
Q |
| |
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||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||| |||| ||| |||||| |
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| T |
19298664 |
gtcttatactcctctagttaatttgtatcttagactcaccattactctaaagggatcacttcaaaatcaccta |
19298736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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